Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   ACL66B_RS15240 Genome accession   NZ_CP178617
Coordinates   2918771..2919775 (-) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis strain QXKL-3     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2913771..2924775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL66B_RS15215 (ACL66B_15215) acuA 2914698..2915330 (+) 633 WP_014480567.1 acetoin utilization protein acetyltransferase AcuA -
  ACL66B_RS15220 (ACL66B_15220) acuB 2915357..2916001 (+) 645 WP_003229294.1 acetoin utilization AcuB family protein -
  ACL66B_RS15225 (ACL66B_15225) acuC 2915998..2917161 (+) 1164 WP_015714526.1 acetoin utilization protein AcuC -
  ACL66B_RS15230 (ACL66B_15230) motS 2917172..2917900 (-) 729 WP_015714527.1 flagellar motor protein MotS -
  ACL66B_RS15235 (ACL66B_15235) motP 2917890..2918708 (-) 819 WP_015714528.1 flagellar motor protein MotP -
  ACL66B_RS15240 (ACL66B_15240) ccpA 2918771..2919775 (-) 1005 WP_003229285.1 catabolite control protein A Regulator
  ACL66B_RS15245 (ACL66B_15245) aroX 2920051..2921127 (-) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  ACL66B_RS15250 (ACL66B_15250) ytxJ 2921363..2921689 (-) 327 WP_015714529.1 bacillithiol system redox-active protein YtxJ -
  ACL66B_RS15255 (ACL66B_15255) ytxH 2921713..2922168 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  ACL66B_RS15260 (ACL66B_15260) ytxG 2922199..2922621 (-) 423 WP_003229276.1 DUF948 domain-containing protein -
  ACL66B_RS15265 (ACL66B_15265) murC 2922783..2924081 (-) 1299 WP_015714530.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=972658 ACL66B_RS15240 WP_003229285.1 2918771..2919775(-) (ccpA) [Bacillus subtilis strain QXKL-3]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=972658 ACL66B_RS15240 WP_003229285.1 2918771..2919775(-) (ccpA) [Bacillus subtilis strain QXKL-3]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGGAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCA
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCCCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCTGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCATTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCAAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGCTTTGATAATACAAGATTAAGCCTCATGGTTCGTCCGCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATTGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTAAGAAAGTCAACCAAGTCATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539
  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503