Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   WOC61_RS00610 Genome accession   NZ_CP150751
Coordinates   112248..112670 (+) Length   140 a.a.
NCBI ID   WP_258922346.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM22698     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 112748..113920 112248..112670 flank 78


Gene organization within MGE regions


Location: 112248..113920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC61_RS00610 (WOC61_00605) comGF 112248..112670 (+) 423 WP_258922346.1 competence type IV pilus minor pilin ComGF Machinery gene
  WOC61_RS00615 (WOC61_00610) - 112748..113920 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 16413.66 Da        Isoelectric Point: 10.0943

>NTDB_id=971781 WOC61_RS00610 WP_258922346.1 112248..112670(+) (comGF) [Staphylococcus aureus strain TUM22698]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVDKVRIIV

Nucleotide


Download         Length: 423 bp        

>NTDB_id=971781 WOC61_RS00610 WP_258922346.1 112248..112670(+) (comGF) [Staphylococcus aureus strain TUM22698]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTTGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTG
ATAAAGTCCGTATAATTGTGTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(66-138)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

100

95

0.95
  comGF Staphylococcus aureus N315

96.241

95

0.914

Multiple sequence alignment