Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   ACK1X7_RS13775 Genome accession   NZ_CP178393
Coordinates   3201932..3204070 (-) Length   712 a.a.
NCBI ID   WP_398159303.1    Uniprot ID   -
Organism   Streptomyces sp. CY1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3196932..3209070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1X7_RS13760 (ACK1X7_13710) - 3197749..3198753 (-) 1005 WP_385142420.1 TerC family protein -
  ACK1X7_RS13765 (ACK1X7_13715) - 3198976..3200985 (-) 2010 WP_390792975.1 TerD family protein -
  ACK1X7_RS13770 (ACK1X7_13720) - 3201158..3201736 (-) 579 WP_216345673.1 TerD family protein -
  ACK1X7_RS13775 (ACK1X7_13725) uvrB 3201932..3204070 (-) 2139 WP_398159303.1 excinuclease ABC subunit UvrB Machinery gene
  ACK1X7_RS13780 (ACK1X7_13730) - 3204286..3205170 (+) 885 WP_413115129.1 glycerophosphodiester phosphodiesterase -
  ACK1X7_RS13785 (ACK1X7_13735) - 3205256..3205894 (+) 639 WP_390793035.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  ACK1X7_RS13790 (ACK1X7_13740) - 3206240..3206893 (+) 654 WP_398159304.1 DUF4360 domain-containing protein -
  ACK1X7_RS13795 (ACK1X7_13745) - 3206924..3207583 (+) 660 WP_361504841.1 DUF4360 domain-containing protein -
  ACK1X7_RS13800 (ACK1X7_13750) - 3207641..3208288 (-) 648 WP_398159305.1 uridine kinase -
  ACK1X7_RS13805 (ACK1X7_13755) - 3208369..3208920 (+) 552 WP_390792972.1 DUF1697 domain-containing protein -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 80156.28 Da        Isoelectric Point: 5.0051

>NTDB_id=971664 ACK1X7_RS13775 WP_398159303.1 3201932..3204070(-) (uvrB) [Streptomyces sp. CY1]
MRPVTQLERKVAPFEVVSPYQPSGDQPTAIADLERRVRGGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLKVGEEIDRDQLLRRFVDIQYARNDMAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISEDRELYVFPASHYVAGPERMEKAIAGIEAELTETLARLEKQGKLLEAQRLRMRTTYDIEMMRQIGTCSGIENYSLH
IDGRESGSPPHTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRTLIEHGFRLPSALDNRPLKWEEFLKRVGQTVYL
SATPGPFELSRGDGFVEQIIRPTGLIDPEVVVKPTEGQIDDLIHEIRTRTEKDERVLVTTLTKKMAEDLTDYMLELGIQV
RYLHSDVDTLRRVELLRELRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKVTPAMAKAIDETNRRRDKQIAYNKANKIDPQPLRKKINDIVAQIAREDVDTEQLLGTGYRKMKDGKDAKTPVPTAGG
KAAKGGKAAKGKAREEVLTDRPAAELAEQIEEMTDRMRAAAAELQFEVAARLRDEVSELKKELRQMREAGVS

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=971664 ACK1X7_RS13775 WP_398159303.1 3201932..3204070(-) (uvrB) [Streptomyces sp. CY1]
ATGCGGCCCGTAACTCAGCTCGAACGCAAGGTGGCGCCCTTCGAGGTCGTCAGCCCCTATCAGCCCAGCGGTGACCAGCC
CACCGCCATCGCCGACCTCGAGCGGCGCGTCCGCGGGGGTGAGAAGGATGTCGTACTGCTCGGCGCGACCGGCACCGGCA
AGTCCGCGACCACCGCATGGATGATCGAGAAGCTTCAGCGGCCCACGCTGGTCATGGCCCCGAACAAGACGCTGGCCGCC
CAGCTCGCCAATGAGTTCCGCGAGCTGCTGCCGAACAACGCGGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACTTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGGCTGCGCCACT
CGGCGACGAATTCGCTGCTCACCCGGCGTGACGTGGTCGTGGTGGCATCCGTCTCCTGTATCTACGGCCTCGGTACGCCG
CAGGAGTACGTGGACCGCATGGTGCCGCTCAAGGTCGGCGAGGAGATCGACCGCGATCAGTTGCTGCGTCGCTTTGTCGA
TATTCAGTACGCCCGTAATGACATGGCGTTCACCCGGGGCACCTTCCGGGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCGGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCGCTCTCCACGCTCCATCCGCTCACCGGC
GAGGTGATCAGCGAGGACCGGGAGCTGTATGTCTTCCCGGCCAGCCACTATGTGGCCGGGCCCGAGCGCATGGAGAAGGC
CATCGCCGGGATCGAGGCCGAGCTCACGGAGACCCTGGCCCGGCTGGAGAAGCAGGGCAAGCTGCTGGAGGCCCAGCGGC
TGCGGATGCGCACCACCTACGACATCGAGATGATGCGCCAGATCGGCACCTGCTCGGGCATCGAGAACTACTCGCTGCAT
ATCGACGGCCGTGAGTCCGGCTCCCCGCCGCACACCCTGCTGGACTACTTCCCGGAGGACTTCCTCCTGGTCATCGACGA
GTCGCATGTCACGGTGCCGCAGATCGGCGCGATGTACGAGGGCGACGCCTCCCGTAAGCGGACCCTGATCGAGCACGGCT
TCCGGCTGCCCTCCGCGCTCGACAACCGCCCGCTGAAGTGGGAGGAGTTCTTGAAGCGCGTCGGCCAGACGGTCTATCTC
TCCGCGACCCCGGGCCCGTTCGAGCTCTCCCGGGGCGATGGCTTCGTGGAGCAGATCATCCGCCCGACCGGCCTGATCGA
CCCCGAGGTCGTCGTCAAGCCGACCGAGGGCCAGATCGACGATCTCATCCATGAGATCCGCACCCGCACCGAGAAGGACG
AGCGCGTCCTGGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTGACCGACTACATGCTCGAGCTGGGCATCCAGGTG
CGCTATCTGCACAGTGATGTGGACACCCTGCGCCGGGTCGAGCTGCTGCGCGAGCTGCGCGCCGGTGAGTTCGACGTGCT
GGTGGGCATCAACCTGCTGCGGGAGGGCCTCGACCTTCCGGAGGTCTCCCTGGTCGCCATCCTCGATGCCGACAAGGAGG
GCTTCCTGCGCTCGGGCACCTCGCTGATCCAGACCATCGGCCGGGCCGCTCGTAACGTGTCGGGCCAGGTGCATATGTAC
GCCGACAAGGTCACCCCGGCGATGGCGAAGGCCATCGACGAGACCAACCGCCGCCGCGACAAGCAGATCGCGTACAACAA
GGCGAACAAGATCGATCCGCAGCCGCTGCGCAAGAAGATCAACGACATCGTGGCCCAGATCGCCCGCGAGGACGTCGACA
CCGAGCAGTTGCTGGGCACCGGCTACCGCAAGATGAAGGACGGCAAGGACGCGAAGACCCCCGTGCCGACGGCCGGCGGC
AAGGCGGCCAAGGGCGGCAAGGCCGCCAAGGGCAAGGCCAGGGAAGAGGTGCTCACCGACCGGCCCGCGGCCGAGCTCGC
CGAGCAGATCGAGGAGATGACCGACCGCATGCGGGCCGCGGCTGCGGAGCTCCAGTTCGAGGTGGCGGCACGACTGCGCG
ACGAGGTGTCGGAGTTGAAGAAGGAGCTGCGGCAGATGAGGGAGGCGGGAGTCTCCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

UvrB/uvrC motif (UVR)

(668-702)

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB interaction domain (UvrB_inter)

(169-257)

Type III restriction enzyme, res subunit (ResIII)

(25-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.558

96.629

0.556
  uvrB Streptococcus pneumoniae R6

57.558

96.629

0.556
  uvrB Streptococcus pneumoniae D39

57.558

96.629

0.556

Multiple sequence alignment