Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACLRDL_RS00780 Genome accession   NZ_CP178387
Coordinates   152420..154498 (+) Length   692 a.a.
NCBI ID   WP_000080590.1    Uniprot ID   -
Organism   Vibrio cholerae isolate CTMA_1842     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 147420..159498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLRDL_RS00760 (ACLRDL_00760) - 148111..148782 (-) 672 WP_001015358.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  ACLRDL_RS00765 (ACLRDL_00765) gmk 149150..149773 (+) 624 WP_000515796.1 guanylate kinase -
  ACLRDL_RS00770 (ACLRDL_00770) rpoZ 149881..150153 (+) 273 WP_000135052.1 DNA-directed RNA polymerase subunit omega -
  ACLRDL_RS00775 (ACLRDL_00775) spoT 150185..152302 (+) 2118 WP_000280448.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  ACLRDL_RS00780 (ACLRDL_00780) recG 152420..154498 (+) 2079 WP_000080590.1 ATP-dependent DNA helicase RecG Machinery gene
  ACLRDL_RS00785 (ACLRDL_00785) - 154845..156245 (+) 1401 WP_000193505.1 uracil-xanthine permease family protein -
  ACLRDL_RS00790 (ACLRDL_00790) envZ 156270..157586 (-) 1317 WP_001222678.1 two-component system sensor histidine kinase EnvZ -
  ACLRDL_RS00795 (ACLRDL_00795) ompR 157655..158377 (-) 723 WP_000230023.1 two-component system response regulator OmpR -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 76948.19 Da        Isoelectric Point: 7.4077

>NTDB_id=971564 ACLRDL_RS00780 WP_000080590.1 152420..154498(+) (recG) [Vibrio cholerae isolate CTMA_1842]
MSQLLSAVPLCELSGVGAKVAEKLEKVGLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAAVQGKVMAVDTLFGKRKML
TVKISDGNGTLTLRFFNFTAAMKNNFAEGKFVHAYGEIKRGNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQL
TLRNLTDQALVLLEKSAVQELLPSGLYDQQMTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAIRS
QGQQDVALPLAPIHQLKQQLLAQLPFTPTKAQQRVVAEIEADLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVA
LMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHR
FGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHACLN
EGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPN
ASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQT
GLADFKIADLVRDQQLVPQVQRIALHIHERYPQNAQAIIDRWLGERDIYAKA

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=971564 ACLRDL_RS00780 WP_000080590.1 152420..154498(+) (recG) [Vibrio cholerae isolate CTMA_1842]
ATGTCACAACTCCTCTCAGCCGTTCCTCTTTGTGAACTCTCCGGTGTCGGGGCCAAAGTCGCCGAAAAACTGGAGAAAGT
CGGTTTGCACACCGTGCAGGATCTGCTGTTTCATCTTCCGCTGCGTTATGAAGATCGCACTCGCGTTTATCCGATAGTGC
AACTGCACCACGGTTTATGGGCCGCGGTACAAGGCAAAGTGATGGCAGTGGATACCCTGTTTGGCAAACGCAAAATGCTC
ACCGTAAAAATCAGTGATGGCAACGGTACACTGACGCTGCGCTTTTTTAACTTCACCGCGGCGATGAAAAACAACTTTGC
GGAAGGCAAATTTGTGCATGCCTATGGGGAGATCAAACGCGGTAATCAAGGCTTAGAGATCATCCATCCTGACTACAAAT
TCTTTGCCCCTGCACAAACGCCCGATGTTGAGCCAAACCTCACTCCGGTTTACCCAACCACTGAAGGACTGCGCCAACTC
ACCCTACGTAATCTCACCGACCAAGCGTTGGTGCTACTGGAAAAATCTGCGGTGCAGGAGTTACTGCCATCCGGACTTTA
CGATCAGCAGATGACCTTAGCCCAAGCGCTGAAAATCATTCATCGCCCATCGGCAGATATCGATTTGCGCCTGTTTGAAC
AAGGGCGACATCCGGCGCAAGTTCGGCTGATCATGGAAGAACTGCTGGCACAGAATCTCTCCATGCTGGCGATTCGCAGC
CAAGGCCAGCAAGATGTGGCCTTGCCACTGGCCCCCATCCACCAACTCAAACAACAACTCTTGGCACAGCTGCCTTTTAC
GCCGACTAAGGCGCAGCAGCGTGTGGTTGCCGAAATCGAAGCGGATTTAGAAAAACCGCATCCTATGATGCGCTTAGTGC
AAGGCGATGTCGGCTCAGGCAAAACCTTAGTCGCAGCACTTGCGGCAGTGCGGGCTATTGAGCATGGTTATCAAGTAGCC
TTGATGGCTCCTACCGAGCTGTTGGCCGAGCAGCACTCGCTCAATTTTGCGCAGTGGCTGGAACCAATGGGCATTCAAGT
AGGATGGCTCGCGGGGAAACTCAAAGGCAAAGCGCGGGAAACGGAGCTGGCACGCATCGCCAGTGGCGAAGTGAAAATGG
TGGTCGGCACCCATGCACTGTTTCAAGAGCAAGTGTCGTTTGACCATCTTGCCTTGGTGATTATTGATGAGCAGCATCGC
TTCGGGGTGCATCAGCGCTTAGAGCTACGCGAGAAAGGCGCAAAACAAGGCGCGTATCCGCATCAGCTCATCATGACTGC
TACTCCGATCCCGCGTACTTTGGCGATGACGGCTTATGCCGATTTGGAAACCTCAGTGATTGATGAGTTACCCCCCGGGC
GTACTCCGATTCAAACCGTAGCGATTCCGGATACCAAACGCGATGAGATTGTCGAGCGCATTCGCCACGCCTGCCTCAAC
GAAGGCAAGCAAGCGTATTGGGTGTGTACTTTGATTGATGAATCCGAAGTGCTGGAAGCGCAAGCGGCCGCAGAAACGGC
CGAGGAACTGCAACGTAAACTGCCCGAAGTCAAAATCGGCTTAGTGCATGGCCGGATGAAACCCGCCGAAAAACAAGCGG
TAATGCAAGCGTTTAAAAACAATGAGCTGCATCTGCTCGTCGCCACTACAGTGATTGAAGTGGGCGTGGATGTGCCCAAT
GCCAGCTTGATGATCATTGAAAACCCCGAACGTTTGGGGCTGGCTCAACTACACCAGCTACGCGGCCGTGTTGGGCGTGG
TACCGTAGCCAGCCATTGTGTTCTGCTGTTTCATGCACCACTCTCCAAAACCGCGCAAAAGCGTTTAGGCGTTTTGCGTG
AAAGCAACGATGGATTTGTCATCGCGCAGCGCGACTTGGAAATTCGTGGCCCCGGAGAGCTACTGGGTACCAAACAAACC
GGCTTGGCCGATTTCAAAATTGCCGATCTGGTACGCGATCAGCAACTGGTTCCGCAAGTGCAACGCATTGCACTTCATAT
CCATGAACGCTACCCACAAAATGCACAAGCTATCATCGACCGCTGGTTAGGCGAGCGTGATATTTACGCCAAAGCTTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(271-432)

RecG wedge domain (RecG_wedge)

(15-170)

Helicase conserved C-terminal domain (Helicase_C)

(479-587)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.744

97.11

0.493
  recG/mmsA Streptococcus pneumoniae R6

39.701

96.821

0.384
  recG/mmsA Streptococcus pneumoniae R36A

39.701

96.821

0.384
  recG Bacillus subtilis subsp. subtilis str. 168

39.324

94.075

0.37