Detailed information NTG0970754

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: WJM45_RS16970
• Genome accession: NZ_CP150634
• Coordinates: 4057172..4058509 (+)
• Length: 445 a.a.
• NCBI ID: WP_341326241.1
• Uniprot ID: -
• Organism: Methylotuvimicrobium sp. KM2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4052172..4063509

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WJM45_RS16955 (WJM45_16955)	sucD	4053043..4053912 (-)	870	WP_341326238.1	succinate--CoA ligase subunit alpha	-
WJM45_RS16960 (WJM45_16960)	sucC	4053909..4055075 (-)	1167	WP_341326239.1	ADP-forming succinate--CoA ligase subunit beta	-
WJM45_RS16965 (WJM45_16965)	-	4055544..4057175 (+)	1632	WP_341326240.1	HAMP domain-containing sensor histidine kinase	-
WJM45_RS16970 (WJM45_16970)	pilR	4057172..4058509 (+)	1338	WP_341326241.1	sigma-54 dependent transcriptional regulator	Regulator
WJM45_RS16975 (WJM45_16975)	-	4058667..4059116 (-)	450	WP_341326242.1	hypothetical protein	-
WJM45_RS16980 (WJM45_16980)	-	4059445..4060665 (-)	1221	WP_341326243.1	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	-
WJM45_RS16985 (WJM45_16985)	ubiH	4060671..4061882 (-)	1212	WP_341326244.1	2-octaprenyl-6-methoxyphenyl hydroxylase	-
WJM45_RS16990 (WJM45_16990)	pepP	4061882..4063192 (-)	1311	WP_341326245.1	Xaa-Pro aminopeptidase	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49423.68 Da
• Isoelectric Point: 6.5119

>NTDB_id=970754 WJM45_RS16970 WP_341326241.1 4057172..4058509(+) (pilR) [Methylotuvimicrobium sp. KM2]
MKHPLTLIVDDEPDIRELLSITLKRMNIDTLCAENVGSARQLLQHHPFDLCLTDMKLPDGNGLELVEYLQSTGSTIPIAV
ITAHGNMDTAIKAMKAGAFDFISKPVDLPVLRQIVTKALQLGPDADTKERRTRHILLGESEPMRQVRSKIDKLARSQAPV
YISGESGSGKELVARLIHQQSPRSDKPFVAVNCGAIPPELMESEFFGHKKGSFSGAIADKKGLFQAAEGGTLFLDEVADL
PPSLQVKLLRAIQEKKVRAVGEQHETPVDVRLLSATHKDLNQLVQEGGFRQDLYYRINVIDLNIPPLRERGDDIAQLAEH
ILTSLNSNNLYRVRLSESALTALKKYRFPGNVRELENILERAVALSDGKTIDSDDLNLPINPEIVPDAPVFNPSKASLED
YLEDIERTAITIALENNRWNKTAAAKELGLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=970754 WJM45_RS16970 WP_341326241.1 4057172..4058509(+) (pilR) [Methylotuvimicrobium sp. KM2]
ATGAAACACCCCCTAACGTTAATCGTCGACGACGAACCGGACATCCGAGAGCTTTTAAGCATTACGCTCAAGCGCATGAA
CATCGATACCTTGTGCGCGGAAAATGTCGGCTCGGCTCGCCAGTTGTTGCAACATCATCCGTTCGATCTTTGCCTAACCG
ATATGAAGCTACCCGACGGCAACGGACTCGAATTGGTCGAATACCTCCAAAGCACGGGTAGCACGATTCCGATTGCCGTG
ATTACCGCACACGGAAACATGGACACTGCGATCAAGGCAATGAAAGCCGGCGCCTTCGACTTTATCTCAAAACCGGTCGA
TTTACCGGTGCTTCGGCAAATCGTCACGAAAGCCCTACAACTAGGCCCCGACGCCGACACCAAAGAAAGACGCACACGAC
ATATTTTATTGGGCGAATCGGAGCCGATGCGTCAAGTCCGGTCCAAAATCGACAAACTGGCACGTAGCCAGGCGCCGGTC
TATATCAGCGGCGAATCGGGGTCGGGTAAGGAATTGGTGGCGCGCTTGATTCATCAGCAAAGCCCGCGTAGCGACAAGCC
TTTTGTTGCCGTAAACTGCGGAGCAATTCCGCCCGAACTCATGGAAAGCGAGTTTTTCGGACATAAAAAAGGCAGTTTCA
GCGGTGCAATTGCCGATAAAAAAGGTTTGTTTCAAGCGGCCGAGGGCGGCACGCTGTTTCTCGATGAAGTCGCTGATCTG
CCTCCCTCGCTGCAAGTCAAATTACTCCGCGCGATTCAGGAAAAAAAAGTCCGCGCGGTCGGCGAACAACACGAAACACC
GGTCGATGTTCGCCTCCTAAGCGCCACGCATAAAGATTTGAATCAATTGGTTCAGGAAGGGGGTTTTCGGCAAGACTTAT
ACTACCGGATCAATGTCATCGATCTCAATATTCCGCCGCTTCGCGAACGAGGCGATGATATCGCGCAACTTGCCGAACAT
ATTTTGACTTCGTTGAATAGCAACAACCTTTACCGAGTTCGGCTTTCGGAATCGGCGCTGACCGCATTGAAAAAGTATCG
TTTCCCAGGCAATGTGAGGGAACTCGAGAATATTCTAGAACGCGCCGTTGCGCTCAGCGACGGCAAAACGATCGATTCGG
ACGATTTAAATCTGCCGATTAATCCGGAAATCGTTCCTGATGCCCCCGTGTTCAACCCGTCAAAAGCGTCGTTAGAAGAT
TATTTGGAAGATATCGAGCGAACCGCCATTACCATCGCTCTCGAAAATAACCGATGGAATAAAACCGCAGCGGCAAAAGA
GCTGGGTTTATCGTTCCGCTCATTGCGTTACCGGCTAAAAAAACTGGGCTTGGACTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-302)

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Response regulator receiver domain (Response_reg) (7-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	64.653	100	0.649
pilR	Acinetobacter baumannii strain A118	51.717	100	0.542
luxO	Vibrio cholerae strain A1552	39.597	100	0.398