Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   WN947_RS02730 Genome accession   NZ_CP150491
Coordinates   535076..535792 (-) Length   238 a.a.
NCBI ID   WP_003386945.1    Uniprot ID   -
Organism   Brevibacillus borstelensis strain S8     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 530076..540792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN947_RS02715 ltrA 530975..532240 (+) 1266 WP_024985202.1 group II intron reverse transcriptase/maturase -
  WN947_RS02720 - 532491..533432 (+) 942 WP_039071135.1 aminoglycoside phosphotransferase family protein -
  WN947_RS02725 - 533688..535079 (-) 1392 WP_339167942.1 HAMP domain-containing sensor histidine kinase -
  WN947_RS02730 scnR 535076..535792 (-) 717 WP_003386945.1 response regulator transcription factor Regulator
  WN947_RS02735 - 535967..536878 (+) 912 WP_122958579.1 ABC transporter ATP-binding protein -
  WN947_RS02740 - 536878..537627 (+) 750 WP_003386943.1 ABC transporter permease -
  WN947_RS02745 - 537639..538370 (+) 732 WP_172920118.1 ABC transporter permease -
  WN947_RS02750 - 538476..539102 (+) 627 WP_031933303.1 DsbA family oxidoreductase -
  WN947_RS02755 - 539329..539925 (+) 597 WP_024985058.1 VanW family protein -
  WN947_RS02760 - 540009..540572 (-) 564 WP_171506468.1 transposase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26802.92 Da        Isoelectric Point: 5.7181

>NTDB_id=970639 WN947_RS02730 WP_003386945.1 535076..535792(-) (scnR) [Brevibacillus borstelensis strain S8]
MDQIKQKKVLIVDDEHEIREMIDSFLRKEGFFRIFHAASCSEAIEVCLSDKPDIAILDVMLPDGDGFSLFSSLRRISDIP
VLFLSARNKDEDRILGLGLGADDYIVKPFLPRELMLRLGAILRRVYAPPKQERLPVFALGSFTVDLEGGVVRSASGEQPL
TAKEHALLKKLYENRGRIVTSDALCNAVWGDDSFGYENTLMVHIRRIREKIESDPSSPEHLLTVRGLGYKLMASEDRA

Nucleotide


Download         Length: 717 bp        

>NTDB_id=970639 WN947_RS02730 WP_003386945.1 535076..535792(-) (scnR) [Brevibacillus borstelensis strain S8]
ATGGACCAGATCAAGCAAAAGAAAGTGCTCATCGTGGATGATGAGCATGAAATACGCGAGATGATCGACAGTTTTTTGCG
AAAGGAAGGCTTTTTTCGGATATTCCATGCGGCAAGCTGCAGCGAGGCGATCGAGGTCTGCCTGTCGGACAAGCCAGACA
TTGCCATTTTGGATGTCATGCTGCCGGATGGGGACGGCTTTTCCCTGTTTTCTTCCCTGCGCAGAATTTCAGACATACCT
GTGCTCTTTCTTTCGGCCAGAAACAAGGATGAAGACCGGATCCTCGGGCTTGGCCTCGGCGCCGACGATTACATTGTCAA
GCCGTTTTTGCCTCGCGAGCTTATGCTGCGCCTGGGAGCCATATTGCGGCGCGTGTACGCTCCGCCAAAGCAGGAGCGGC
TGCCTGTTTTTGCGCTGGGGAGCTTTACTGTCGATTTGGAAGGGGGCGTGGTACGCAGCGCGAGCGGAGAACAGCCGTTG
ACCGCCAAGGAGCATGCCCTGCTGAAAAAGCTGTATGAAAACCGCGGGCGCATCGTCACAAGCGACGCTTTGTGCAACGC
GGTATGGGGTGACGACAGCTTTGGATACGAAAATACCCTCATGGTTCACATCCGGCGCATCCGGGAAAAAATCGAGTCGG
ATCCCTCCTCCCCTGAACACCTGCTGACTGTAAGAGGGCTGGGCTACAAGCTGATGGCAAGCGAGGATCGGGCATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(159-231)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.435

96.639

0.487
  micA Streptococcus pneumoniae Cp1015

41.304

96.639

0.399
  vicR Streptococcus mutans UA159

39.485

97.899

0.387

Multiple sequence alignment