Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   WN947_RS01400 Genome accession   NZ_CP150491
Coordinates   269700..271424 (+) Length   574 a.a.
NCBI ID   WP_003387245.1    Uniprot ID   -
Organism   Brevibacillus borstelensis strain S8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 264700..276424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN947_RS01380 dxs 265566..267452 (+) 1887 WP_122958421.1 1-deoxy-D-xylulose-5-phosphate synthase -
  WN947_RS01385 - 267449..268261 (+) 813 WP_172920381.1 TlyA family RNA methyltransferase -
  WN947_RS01390 - 268372..269229 (+) 858 WP_024984906.1 NAD(+)/NADH kinase -
  WN947_RS01395 argR 269234..269683 (+) 450 WP_340701260.1 transcriptional regulator ArgR -
  WN947_RS01400 recN 269700..271424 (+) 1725 WP_003387245.1 DNA repair protein RecN Machinery gene
  WN947_RS01405 spoIVB 271670..273001 (+) 1332 WP_003387243.1 SpoIVB peptidase -
  WN947_RS01410 spo0A 273248..274036 (+) 789 WP_024984907.1 sporulation transcription factor Spo0A -
  WN947_RS01415 - 274404..274754 (-) 351 WP_243014071.1 hypothetical protein -
  WN947_RS01420 - 274903..275667 (+) 765 WP_171506315.1 metallophosphoesterase family protein -
  WN947_RS01425 - 275842..276420 (+) 579 WP_003387239.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64903.93 Da        Isoelectric Point: 4.9824

>NTDB_id=970636 WN947_RS01400 WP_003387245.1 269700..271424(+) (recN) [Brevibacillus borstelensis strain S8]
MLLELSIRNFAIIKSVTISFQKGLNILTGETGAGKSIIIDALGLLLGGRASTDFVRYGETRAEVEGLFELPSGHPAFSVC
ESFGVQVEQDNTLVVRRDISSQGKSIIRINGQLVTLAMLRELGPWLVTVHGQHDTHMLMQADKHIHWLDSYGEKEMGSAK
QEYAQLFGLYSKTRQDLERMSKNERELVQRIDLLQYQLNEIEAASLAPGEDEKLLQQRKKWMNIEKVFAGIQDAYRALHG
DQRGSEWLGHAMSELERIVSYDDQLGPILETVQSAYYQVEDAVHQLRQLSDRLDFEPEQLQEVERRLDLIQTLKRKYGKN
VDDILEYAATIQDELDEMHHYDDRLQQLEKRLVELAADLAVEALELSMIRRSCADRLAKEIEQQLRELHMERARFAIDVR
QIPDENGVEIEGAKWRVDANGIDTVEFLISPNPGEPLRPLAKIASGGELSRVMLAIKTILAGTDQVQTLIFDEVDTGVSG
RAAQAIAEKLARVALQRQVLCITHLPQVASLADAHFLIQKEMSENETMTLVHSLREEERVTELARMLSGAEVTAKTEEHA
REMITLGRQRKAAK

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=970636 WN947_RS01400 WP_003387245.1 269700..271424(+) (recN) [Brevibacillus borstelensis strain S8]
ATGCTGCTGGAGCTTTCCATACGCAATTTTGCGATCATCAAATCCGTAACCATTTCTTTTCAAAAAGGCTTAAACATTTT
GACCGGGGAGACCGGTGCGGGAAAATCGATTATTATTGATGCGCTCGGCCTGCTGCTGGGAGGCCGGGCCTCGACTGATT
TTGTCCGGTACGGGGAAACGCGGGCAGAAGTCGAGGGTCTGTTTGAGCTGCCCAGCGGCCATCCGGCCTTTTCGGTTTGC
GAGAGCTTCGGTGTTCAGGTAGAGCAGGACAACACGCTTGTCGTCAGGCGCGATATTTCCAGTCAGGGAAAAAGCATCAT
CCGCATCAACGGACAGCTTGTCACCCTTGCCATGCTCAGGGAGCTGGGCCCCTGGCTGGTGACCGTCCACGGACAGCATG
ACACTCATATGCTGATGCAGGCGGACAAGCACATACACTGGCTCGATTCCTACGGCGAAAAAGAAATGGGATCGGCCAAA
CAGGAGTATGCACAGTTGTTTGGCCTCTATTCAAAGACGAGACAGGATCTGGAACGGATGTCCAAAAACGAACGGGAGCT
CGTTCAGCGGATCGATCTGCTGCAATACCAGTTAAACGAAATCGAGGCAGCATCCCTGGCGCCCGGAGAGGACGAAAAGC
TGCTTCAGCAGAGAAAGAAATGGATGAACATTGAGAAGGTATTTGCAGGCATCCAGGACGCCTACCGGGCCCTGCACGGC
GACCAGCGCGGAAGCGAGTGGCTTGGACATGCCATGAGCGAGCTGGAACGAATTGTCTCCTATGATGATCAGTTGGGACC
GATACTCGAGACGGTCCAAAGCGCATACTATCAGGTAGAAGATGCAGTGCACCAGCTCAGACAGCTCTCCGACCGGCTCG
ATTTTGAACCGGAGCAGCTTCAGGAAGTAGAGAGAAGGCTGGATTTGATCCAGACGCTGAAGAGAAAATACGGGAAAAAT
GTAGACGATATTCTGGAATATGCGGCAACGATTCAGGATGAATTGGACGAAATGCATCATTACGATGACCGTCTGCAGCA
ACTGGAAAAACGGCTGGTTGAGCTGGCTGCCGATCTCGCCGTCGAGGCACTGGAGCTGTCCATGATCCGCCGCAGCTGTG
CAGACCGGCTTGCCAAGGAAATTGAGCAGCAGCTTCGCGAATTACATATGGAGCGCGCCCGCTTCGCCATCGATGTCCGG
CAAATTCCCGATGAAAACGGGGTGGAAATCGAGGGAGCCAAATGGCGCGTCGATGCCAACGGAATCGATACCGTCGAGTT
TTTAATTTCGCCCAATCCCGGAGAGCCGCTGCGCCCTTTGGCCAAAATCGCTTCCGGCGGTGAGCTGTCGCGGGTCATGC
TGGCGATCAAGACGATTTTGGCCGGTACCGACCAGGTGCAGACCTTGATTTTCGACGAGGTCGATACAGGGGTAAGCGGA
AGGGCTGCCCAAGCCATTGCTGAAAAGCTTGCACGTGTCGCGCTCCAGCGTCAGGTGTTGTGCATTACACACCTTCCGCA
GGTAGCTTCTCTCGCGGATGCCCATTTCCTGATTCAAAAGGAGATGAGCGAGAACGAAACGATGACGCTCGTTCACAGCT
TACGCGAGGAGGAGCGGGTCACCGAGCTGGCTCGCATGCTGAGCGGAGCCGAGGTTACAGCAAAAACAGAAGAGCACGCG
CGCGAGATGATCACGCTCGGGCGACAACGAAAAGCTGCCAAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.306

100

0.495

Multiple sequence alignment