Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   WHC13_RS17240 Genome accession   NZ_CP150487
Coordinates   3252406..3253050 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain JNF2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3247406..3258050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHC13_RS17205 (WHC13_17205) mrpB 3248598..3249029 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  WHC13_RS17210 (WHC13_17210) mrpC 3249029..3249370 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  WHC13_RS17215 (WHC13_17215) mrpD 3249363..3250844 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  WHC13_RS17220 (WHC13_17220) mrpE 3250850..3251326 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  WHC13_RS17225 (WHC13_17225) mrpF 3251326..3251610 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  WHC13_RS17230 (WHC13_17230) mnhG 3251594..3251968 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  WHC13_RS17235 (WHC13_17235) yuxO 3252007..3252387 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  WHC13_RS17240 (WHC13_17240) comA 3252406..3253050 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  WHC13_RS17245 (WHC13_17245) comP 3253131..3255439 (-) 2309 Protein_3333 two-component system sensor histidine kinase ComP -
  WHC13_RS17250 (WHC13_17250) comX 3255454..3255621 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  WHC13_RS17255 (WHC13_17255) comQ 3255609..3256508 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  WHC13_RS17260 (WHC13_17260) degQ 3256693..3256833 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  WHC13_RS17265 (WHC13_17265) - 3257055..3257180 (+) 126 WP_003228793.1 hypothetical protein -
  WHC13_RS17270 (WHC13_17270) - 3257294..3257662 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=970612 WHC13_RS17240 WP_003220716.1 3252406..3253050(-) (comA) [Bacillus subtilis strain JNF2]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=970612 WHC13_RS17240 WP_003220716.1 3252406..3253050(-) (comA) [Bacillus subtilis strain JNF2]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment