Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   SOZ35_RS12730 Genome accession   NZ_CP150480
Coordinates   2574011..2575081 (-) Length   356 a.a.
NCBI ID   WP_063638548.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain TL401     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2569011..2580081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOZ35_RS12685 (SOZ35_12685) tapA 2569546..2570247 (-) 702 WP_063638542.1 amyloid fiber anchoring/assembly protein TapA -
  SOZ35_RS12690 (SOZ35_12690) - 2570509..2570832 (+) 324 WP_003325436.1 DUF3889 domain-containing protein -
  SOZ35_RS12695 (SOZ35_12695) - 2570879..2571058 (-) 180 WP_003325435.1 YqzE family protein -
  SOZ35_RS12700 (SOZ35_12700) comGG 2571128..2571502 (-) 375 WP_340639515.1 competence type IV pilus minor pilin ComGG Machinery gene
  SOZ35_RS12705 (SOZ35_12705) comGF 2571503..2571898 (-) 396 WP_340640733.1 competence type IV pilus minor pilin ComGF Machinery gene
  SOZ35_RS12710 (SOZ35_12710) comGE 2571912..2572259 (-) 348 WP_340639516.1 competence type IV pilus minor pilin ComGE Machinery gene
  SOZ35_RS12715 (SOZ35_12715) comGD 2572243..2572608 (-) 366 WP_255265361.1 competence type IV pilus minor pilin ComGD Machinery gene
  SOZ35_RS12720 (SOZ35_12720) comGC 2572673..2572981 (-) 309 WP_087941811.1 competence type IV pilus major pilin ComGC Machinery gene
  SOZ35_RS12725 (SOZ35_12725) comGB 2572987..2574024 (-) 1038 WP_061669999.1 competence type IV pilus assembly protein ComGB Machinery gene
  SOZ35_RS12730 (SOZ35_12730) comGA 2574011..2575081 (-) 1071 WP_063638548.1 competence type IV pilus ATPase ComGA Machinery gene
  SOZ35_RS12735 (SOZ35_12735) - 2575471..2576424 (-) 954 WP_003325425.1 magnesium transporter CorA family protein -
  SOZ35_RS12740 (SOZ35_12740) - 2576536..2577894 (+) 1359 WP_013390599.1 hemolysin family protein -
  SOZ35_RS12745 (SOZ35_12745) - 2577961..2578812 (-) 852 WP_340639517.1 STAS domain-containing protein -
  SOZ35_RS12755 (SOZ35_12755) - 2579077..2579457 (-) 381 WP_003325422.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  SOZ35_RS12760 (SOZ35_12760) - 2579695..2579940 (+) 246 WP_003325421.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40457.76 Da        Isoelectric Point: 9.4624

>NTDB_id=970494 SOZ35_RS12730 WP_063638548.1 2574011..2575081(-) (comGA) [Bacillus atrophaeus strain TL401]
MDTIEKTSRTLIEEAYSVKASDIHIVPREQDALIHFRIDHALLKKRTMKKEECVRLISHFKFLSAMDIGERRKPQSGSLS
LKLKKGTVYLRMSTLPTINDESLVIRVLPQHNIPAIERLSLFPKTGATLLSFLKHSHGLIIFTGPTGSGKSTTLYSLVQY
AKKHFNRNIITLEDPVETRDQDVLQVQVNEKAGITYSAGLKAILRHDPDMIVLGEIRDAETAKIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGVNMNEIEQTAIAIAAQRLVDLTCPFCENGCSSVYCRITRDVRRATIYELLYGKNLQQCIQEARGE
RANYQYRTLRQIIRKGIALGYLTTNNYDRWVYHEED

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=970494 SOZ35_RS12730 WP_063638548.1 2574011..2575081(-) (comGA) [Bacillus atrophaeus strain TL401]
TTGGATACGATAGAAAAAACTAGCAGGACATTAATTGAAGAGGCATATTCCGTGAAGGCCTCGGATATTCACATTGTACC
AAGGGAGCAAGATGCTTTGATCCATTTTCGGATTGACCATGCGTTGCTGAAGAAGCGGACAATGAAAAAGGAAGAGTGCG
TTCGGCTCATTTCCCATTTTAAATTTCTGTCAGCCATGGATATAGGAGAAAGGCGGAAGCCGCAAAGTGGTTCACTTTCT
TTAAAGCTTAAAAAAGGGACAGTTTATCTCAGAATGTCGACACTTCCTACGATTAATGATGAAAGCCTCGTGATCAGAGT
TTTGCCTCAGCATAATATTCCTGCGATCGAAAGACTGTCCCTGTTCCCAAAGACAGGCGCCACGCTGCTATCCTTTTTAA
AGCACTCCCATGGCCTCATTATTTTTACCGGTCCGACTGGCTCAGGGAAATCTACCACCCTATATTCACTGGTTCAATAT
GCAAAAAAGCATTTCAACCGAAATATTATCACTCTCGAAGATCCTGTGGAAACTAGAGATCAGGATGTTTTGCAGGTACA
GGTTAATGAAAAAGCCGGCATTACGTACTCAGCGGGCCTGAAGGCGATTTTGCGCCATGATCCAGACATGATTGTTCTGG
GGGAAATCAGGGATGCTGAAACAGCAAAAATCGCCGTGCGGGCTGCTATGACAGGCCATTTGGTATTAACAAGCCTGCAC
ACAAGAGATGCCAAGGGCGCCATTTACAGACTGCTTGAATTCGGAGTAAATATGAATGAAATAGAGCAAACAGCGATTGC
GATAGCAGCCCAGCGATTAGTTGACTTAACCTGTCCATTTTGTGAAAACGGCTGTTCCTCTGTTTATTGCCGGATTACAC
GTGATGTAAGGCGAGCGACCATTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATACAAGAAGCTAGAGGAGAA
CGGGCAAATTATCAGTACCGAACCTTACGGCAGATTATCAGAAAAGGAATCGCGCTTGGCTATCTAACGACGAATAATTA
CGACCGGTGGGTTTATCATGAAGAGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

87.921

100

0.879

Multiple sequence alignment