Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SOZ35_RS13000 Genome accession   NZ_CP150480
Coordinates   2623523..2624290 (-) Length   255 a.a.
NCBI ID   WP_004429489.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain TL401     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2618523..2629290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOZ35_RS12980 (SOZ35_12980) - 2618681..2619493 (-) 813 WP_004429498.1 pyruvate, water dikinase regulatory protein -
  SOZ35_RS12985 (SOZ35_12985) ccpN 2619519..2620157 (-) 639 WP_034718267.1 transcriptional regulator CcpN -
  SOZ35_RS12990 (SOZ35_12990) glyS 2620305..2622344 (-) 2040 WP_340639530.1 glycine--tRNA ligase subunit beta -
  SOZ35_RS12995 (SOZ35_12995) glyQ 2622337..2623224 (-) 888 WP_004429491.1 glycine--tRNA ligase subunit alpha -
  SOZ35_RS13000 (SOZ35_13000) recO 2623523..2624290 (-) 768 WP_004429489.1 DNA repair protein RecO Machinery gene
  SOZ35_RS13005 (SOZ35_13005) - 2624327..2624470 (-) 144 WP_004429487.1 YqzL family protein -
  SOZ35_RS13010 (SOZ35_13010) era 2624627..2625532 (-) 906 WP_004429485.1 GTPase Era -
  SOZ35_RS13015 (SOZ35_13015) - 2625513..2625923 (-) 411 WP_340639531.1 cytidine deaminase -
  SOZ35_RS13020 (SOZ35_13020) - 2626037..2626414 (-) 378 WP_004429481.1 diacylglycerol kinase family protein -
  SOZ35_RS13025 (SOZ35_13025) ybeY 2626395..2626868 (-) 474 WP_010789237.1 rRNA maturation RNase YbeY -
  SOZ35_RS13030 (SOZ35_13030) - 2626869..2629004 (-) 2136 WP_010789238.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29196.91 Da        Isoelectric Point: 8.5598

>NTDB_id=970495 SOZ35_RS13000 WP_004429489.1 2623523..2624290(-) (recO) [Bacillus atrophaeus strain TL401]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKTNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFELILESLKRLNEGIDPDVITFIVQMKMLGVIGLYPELNHCVHCQSQDG
TFHFSVRDNGFICHRCFGKDPYKVPITPQTARLLRLFYYFDLSRLGNVSIKQETKDELKRVIDLYYEEYSGIYLKSKRFL
DQMESMKNLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=970495 SOZ35_RS13000 WP_004429489.1 2623523..2624290(-) (recO) [Bacillus atrophaeus strain TL401]
ATGCTGACAAAATGTGAAGGAATTGTCCTTCGTACCAATGACTACGGCGAAACAAATAAGATTGTGACCCTGCTGACAAG
GGAGCACGGCAAAATCGGCGTAATGGCAAGAGGCGCCAAAAAAACCAACAGCCGTTTATCAGCCGTCAGCCAGCCTTTTC
TGTATGGATCGTTTTTAATGCAAAAAACGTCAGGTCTCGGGACGCTTCAGCAGGGTGAAATGATTCTCAGTATGAGAGGC
ATCAGAGAAGATTTGTTTTTGACAGCTTATGCTGCTTTTATTGCAGAACTTGTTGATAAGGGGACGGAGGAAAAGAAGCC
GAACCCGTATTTGTTTGAATTGATTCTTGAGTCTTTGAAGAGGCTTAATGAAGGAATCGACCCCGATGTCATTACCTTCA
TCGTTCAAATGAAAATGCTGGGTGTAATAGGATTGTATCCTGAACTTAACCACTGTGTGCATTGTCAAAGTCAGGATGGA
ACGTTTCATTTTTCTGTCAGGGATAACGGATTTATCTGTCATCGCTGCTTTGGCAAGGACCCTTACAAAGTGCCGATTAC
GCCGCAAACGGCCAGGCTTTTGAGACTGTTTTATTACTTTGATCTTTCTAGACTCGGCAATGTATCCATAAAGCAGGAAA
CAAAAGATGAGCTGAAGCGGGTCATTGACTTGTATTACGAAGAATATTCCGGAATTTATCTTAAATCAAAACGTTTTTTA
GACCAAATGGAGAGTATGAAAAATCTAATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

92.549

100

0.925

Multiple sequence alignment