Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MHH48_RS34775 Genome accession   NZ_CP150303
Coordinates   7675844..7676338 (-) Length   164 a.a.
NCBI ID   WP_076326285.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL F4-0100     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 7670844..7681338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH48_RS34760 (MHH48_34760) - 7671575..7673338 (-) 1764 WP_076326281.1 ABC transporter substrate-binding protein -
  MHH48_RS34765 (MHH48_34765) - 7674060..7674734 (-) 675 WP_076326282.1 SOS response-associated peptidase -
  MHH48_RS34770 (MHH48_34770) rpsR 7675550..7675822 (-) 273 WP_006207333.1 30S ribosomal protein S18 -
  MHH48_RS34775 (MHH48_34775) ssbA 7675844..7676338 (-) 495 WP_076326285.1 single-stranded DNA-binding protein Machinery gene
  MHH48_RS34780 (MHH48_34780) rpsF 7676387..7676671 (-) 285 WP_036640509.1 30S ribosomal protein S6 -
  MHH48_RS34785 (MHH48_34785) - 7676910..7677104 (+) 195 WP_053490757.1 YjzC family protein -
  MHH48_RS34795 (MHH48_34795) - 7677842..7678063 (-) 222 WP_076326286.1 DUF951 domain-containing protein -
  MHH48_RS34800 (MHH48_34800) - 7678131..7679027 (-) 897 WP_076326287.1 mechanosensitive ion channel family protein -
  MHH48_RS34805 (MHH48_34805) - 7679043..7679297 (-) 255 WP_083659846.1 DUF3343 domain-containing protein -
  MHH48_RS34810 (MHH48_34810) yyaC 7679558..7680163 (+) 606 WP_076326288.1 spore protease YyaC -
  MHH48_RS34815 (MHH48_34815) - 7680138..7680638 (-) 501 WP_076326289.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18117.78 Da        Isoelectric Point: 4.8536

>NTDB_id=970076 MHH48_RS34775 WP_076326285.1 7675844..7676338(-) (ssbA) [Paenibacillus sp. FSL F4-0100]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTGQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESNRETSGGGGNREESSFSGGSNSNSSGGNRGNNNNSRNNNQDPFSDEGKPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=970076 MHH48_RS34775 WP_076326285.1 7675844..7676338(-) (ssbA) [Paenibacillus sp. FSL F4-0100]
TTGTTGAACCGTGTCATTTTGATTGGCCGACTGACTAAGGATCCCGAGCTGCGATATACTCCTTCAGGTGTTGCTGTAAC
GCAATTTACACTTGCTGTCGATCGTCCGTTTACTGGACAAGGCGGGGAGCGCGAAGCGGATTTCATTCCGGTCGTGACCT
GGAGACAGCTTGCGGAGACTTGTGCAAACTATCTGCGTAAAGGCCGTCTGACGGCTGTAGAAGGGCGCATTCAAGTGCGG
AATTACGAGAATAACGAAGGTAAGCGTGTATACGTCACCGAAGTCATTGCCGATAATGTTCGCTTCTTGGAGTCAAACCG
TGAAACAAGCGGTGGCGGAGGAAATCGTGAGGAATCATCGTTTAGCGGAGGAAGCAACAGCAATAGCAGTGGCGGAAACC
GTGGGAACAATAACAACTCGCGAAACAACAATCAGGATCCTTTTTCCGATGAAGGAAAACCGATCGATATTTCGGATGAT
GATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.616
  ssb Latilactobacillus sakei subsp. sakei 23K

50.575

100

0.537
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.692

63.415

0.366

Multiple sequence alignment