Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   MHI52_RS02280 Genome accession   NZ_CP150295
Coordinates   470308..471021 (+) Length   237 a.a.
NCBI ID   WP_036616668.1    Uniprot ID   A0AAN4L6C1
Organism   Paenibacillus sp. FSL H8-0283     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 465308..476021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI52_RS02250 (MHI52_02245) - 465895..466023 (+) 129 WP_256720184.1 hypothetical protein -
  MHI52_RS02255 (MHI52_02250) - 466016..467272 (+) 1257 WP_076253896.1 DUF445 domain-containing protein -
  MHI52_RS02260 (MHI52_02255) - 467358..467711 (-) 354 WP_036616662.1 YxeA family protein -
  MHI52_RS02265 (MHI52_02260) - 467741..468472 (-) 732 WP_036673135.1 ABC transporter permease -
  MHI52_RS02270 (MHI52_02265) - 468485..469234 (-) 750 WP_036673138.1 ABC transporter permease -
  MHI52_RS02275 (MHI52_02270) - 469234..470169 (-) 936 WP_405158360.1 ABC transporter ATP-binding protein -
  MHI52_RS02280 (MHI52_02275) scnR 470308..471021 (+) 714 WP_036616668.1 response regulator transcription factor Regulator
  MHI52_RS02285 (MHI52_02280) - 471021..472403 (+) 1383 WP_405158361.1 sensor histidine kinase -
  MHI52_RS02290 (MHI52_02285) - 472681..472863 (+) 183 WP_036616672.1 type A2 lanthipeptide -
  MHI52_RS02295 (MHI52_02290) - 472968..473246 (+) 279 WP_405158362.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27063.53 Da        Isoelectric Point: 5.2460

>NTDB_id=969810 MHI52_RS02280 WP_036616668.1 470308..471021(+) (scnR) [Paenibacillus sp. FSL H8-0283]
MELLKNKKILIVDDEPEIREMIERFLRKEGFFRIYTAGNFVNALAVCRLEKPDAAILDVMLPDGDGFSLLSSIRSFSDMP
VLFLSARGEDEDRLLGLGLGADDYMVKPFLPRELILRLMAILKRVYASNTVERLPVFRLGGQTIDLESAVVQRTDRELPL
TAKEHAILIKLYENQGRIVTSDALCQAVWGDESYGYENTLMVHVRRIREKIEEDPSKPIFLLTVRGLGYKLMVQESR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=969810 MHI52_RS02280 WP_036616668.1 470308..471021(+) (scnR) [Paenibacillus sp. FSL H8-0283]
ATGGAATTATTGAAGAATAAGAAAATATTGATCGTAGATGATGAGCCCGAAATACGGGAAATGATTGAACGTTTTTTACG
GAAAGAAGGTTTTTTCCGGATCTATACGGCTGGTAACTTCGTGAATGCTTTGGCGGTATGCAGACTTGAAAAGCCGGATG
CAGCTATTCTGGATGTGATGCTTCCGGATGGAGATGGGTTCTCTTTGCTCTCTTCGATCCGGTCATTCTCGGACATGCCT
GTTCTGTTCCTGTCTGCACGTGGTGAAGATGAGGATCGACTGCTCGGTCTGGGGCTTGGAGCAGATGATTATATGGTCAA
GCCCTTTCTGCCAAGAGAGTTGATTCTCCGGCTTATGGCTATTCTGAAGCGGGTATATGCCTCCAATACGGTGGAGAGAT
TGCCTGTATTCCGTTTGGGTGGACAAACTATTGATCTGGAGAGCGCTGTTGTACAGAGGACAGACAGGGAGCTTCCATTG
ACAGCTAAGGAGCATGCCATACTGATCAAGTTGTATGAGAATCAGGGCCGAATTGTAACCAGTGATGCCCTGTGTCAAGC
CGTCTGGGGAGACGAGAGTTATGGGTATGAGAATACCCTGATGGTGCATGTTCGGCGAATCCGGGAGAAGATTGAGGAAG
ATCCATCCAAACCGATATTTCTGCTGACGGTACGGGGACTTGGTTATAAATTGATGGTTCAGGAGTCTAGGTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.218

96.624

0.485
  micA Streptococcus pneumoniae Cp1015

40.87

97.046

0.397
  vicR Streptococcus mutans UA159

40.175

96.624

0.388

Multiple sequence alignment