Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MHI43_RS32010 Genome accession   NZ_CP150293
Coordinates   7097164..7097658 (-) Length   164 a.a.
NCBI ID   WP_015738118.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H8-0457     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 7092164..7102658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI43_RS31995 (MHI43_31995) - 7092828..7094597 (-) 1770 WP_036659571.1 ABC transporter substrate-binding protein -
  MHI43_RS32000 (MHI43_32000) - 7095325..7095999 (-) 675 WP_036659573.1 SOS response-associated peptidase -
  MHI43_RS32005 (MHI43_32005) rpsR 7096870..7097142 (-) 273 WP_006207333.1 30S ribosomal protein S18 -
  MHI43_RS32010 (MHI43_32010) ssbA 7097164..7097658 (-) 495 WP_015738118.1 single-stranded DNA-binding protein Machinery gene
  MHI43_RS32015 (MHI43_32015) rpsF 7097706..7097990 (-) 285 WP_009591503.1 30S ribosomal protein S6 -
  MHI43_RS32020 (MHI43_32020) - 7098229..7098423 (+) 195 WP_015738119.1 YjzC family protein -
  MHI43_RS32030 (MHI43_32030) - 7099225..7099446 (-) 222 WP_015738120.1 DUF951 domain-containing protein -
  MHI43_RS32035 (MHI43_32035) - 7099512..7100333 (-) 822 WP_235201602.1 mechanosensitive ion channel domain-containing protein -
  MHI43_RS32040 (MHI43_32040) - 7100430..7100684 (-) 255 WP_015738122.1 DUF3343 domain-containing protein -
  MHI43_RS32045 (MHI43_32045) yyaC 7100945..7101550 (+) 606 WP_036659575.1 spore protease YyaC -
  MHI43_RS32050 (MHI43_32050) - 7101507..7102025 (-) 519 WP_015738124.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18133.82 Da        Isoelectric Point: 4.8536

>NTDB_id=969781 MHI43_RS32010 WP_015738118.1 7097164..7097658(-) (ssbA) [Paenibacillus sp. FSL H8-0457]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTGQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESNRETSGGGGNREESSFNGGSNGNSGGGNRGNNNYSRNNNQDPFSDEGKPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=969781 MHI43_RS32010 WP_015738118.1 7097164..7097658(-) (ssbA) [Paenibacillus sp. FSL H8-0457]
TTGTTGAACCGTGTCATTTTGATTGGCCGACTGACTAAGGATCCCGAGCTGCGATATACTCCTTCAGGTGTTGCTGTAAC
GCAATTTACACTTGCTGTTGATCGTCCGTTTACTGGACAAGGCGGGGAGCGCGAAGCGGATTTCATTCCGGTCGTGACCT
GGAGACAGCTTGCGGAGACTTGTGCAAACTATCTGCGCAAAGGCCGTCTGACGGCTGTAGAAGGGCGCATTCAAGTGCGG
AATTACGAGAATAACGAAGGTAAGCGTGTATACGTCACCGAAGTCATTGCCGATAATGTTCGCTTCTTGGAGTCAAACCG
TGAAACAAGCGGTGGCGGAGGAAATCGTGAGGAATCATCGTTTAACGGAGGAAGCAACGGCAATAGCGGTGGCGGAAACC
GGGGGAACAATAACTACTCGCGAAACAACAATCAGGATCCTTTTTCCGATGAAGGAAAACCGATCGATATTTCGGATGAT
GATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.616
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.537
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.692

63.415

0.366

Multiple sequence alignment