Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MHB44_RS23180 Genome accession   NZ_CP150292
Coordinates   4806985..4807554 (-) Length   189 a.a.
NCBI ID   WP_341301075.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL H8-0500     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4801985..4812554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB44_RS23160 (MHB44_23160) - 4803858..4804799 (-) 942 WP_341301072.1 YybS family protein -
  MHB44_RS23165 (MHB44_23165) - 4805453..4805854 (-) 402 WP_341301073.1 topoisomerase -
  MHB44_RS23170 (MHB44_23170) - 4806304..4806564 (-) 261 WP_341301074.1 hypothetical protein -
  MHB44_RS23175 (MHB44_23175) rpsR 4806707..4806943 (-) 237 WP_004233359.1 30S ribosomal protein S18 -
  MHB44_RS23180 (MHB44_23180) ssbA 4806985..4807554 (-) 570 WP_341301075.1 single-stranded DNA-binding protein Machinery gene
  MHB44_RS23185 (MHB44_23185) rpsF 4807595..4807882 (-) 288 WP_053997086.1 30S ribosomal protein S6 -
  MHB44_RS23190 (MHB44_23190) - 4808049..4808597 (+) 549 WP_341301076.1 DUF3267 domain-containing protein -
  MHB44_RS23195 (MHB44_23195) - 4808655..4809377 (-) 723 WP_341301077.1 hypothetical protein -
  MHB44_RS23200 (MHB44_23200) - 4809465..4809665 (-) 201 WP_341301078.1 hypothetical protein -
  MHB44_RS23205 (MHB44_23205) ychF 4809859..4810959 (-) 1101 WP_341301079.1 redox-regulated ATPase YchF -
  MHB44_RS23210 (MHB44_23210) - 4811057..4811257 (-) 201 WP_341303032.1 DUF951 domain-containing protein -
  MHB44_RS23215 (MHB44_23215) - 4811259..4812131 (-) 873 WP_341301080.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20573.62 Da        Isoelectric Point: 4.7719

>NTDB_id=969752 MHB44_RS23180 WP_341301075.1 4806985..4807554(-) (ssbA) [Lysinibacillus sp. FSL H8-0500]
MINRVVLVGRLTKDPELRYTPNGIASTRFTVAVNRTFSNQQGEREADFISCVAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRSGGGAPAPQYGAGQTYGNNQPPYGGGQPQQQFGGAMPGQGAYGGDTYQQNQPPM
NQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=969752 MHB44_RS23180 WP_341301075.1 4806985..4807554(-) (ssbA) [Lysinibacillus sp. FSL H8-0500]
ATGATAAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCTGAGCTGCGTTATACACCAAATGGCATTGCGTCCAC
AAGATTTACAGTTGCTGTTAATCGTACATTCTCAAACCAACAGGGTGAACGCGAGGCAGATTTTATAAGCTGTGTTGCAT
GGCGAAAACAAGCTGAAAACCTAGCGAACTTTATGCGAAAAGGAAGTTTGATTGGGGTAGAAGGTCGGATCCAAACAGGC
AGCTATGAAGGACAAGACGGTAAACGAGTATACACAACAGATGTTGTAGCGGATAGCGTACAGTTTTTAGAACCCCGTAG
TGGTGGCGGTGCTCCTGCTCCTCAATACGGTGCTGGACAAACTTACGGTAATAACCAACCACCATATGGCGGTGGTCAGC
CACAACAACAGTTTGGTGGTGCTATGCCAGGTCAAGGTGCTTATGGCGGCGATACGTATCAACAAAATCAACCACCTATG
AATCAGCCAAATTATACACGTGTAGATGAGGATCCATTTGCAAATAGCAAAGGACCAATCGAAGTATCTGAGGATGATCT
TCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.082

100

0.561
  ssb Latilactobacillus sakei subsp. sakei 23K

48.677

100

0.487

Multiple sequence alignment