Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NSQ62_RS20830 Genome accession   NZ_CP150291
Coordinates   4128718..4129281 (-) Length   187 a.a.
NCBI ID   WP_341321918.1    Uniprot ID   -
Organism   Solibacillus sp. FSL H8-0523     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4123718..4134281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ62_RS20810 (NSQ62_20810) rplI 4124808..4125254 (-) 447 WP_341321915.1 50S ribosomal protein L9 -
  NSQ62_RS20815 (NSQ62_20815) - 4125251..4127224 (-) 1974 WP_341321916.1 DHH family phosphoesterase -
  NSQ62_RS20820 (NSQ62_20820) - 4127238..4128185 (-) 948 WP_341321917.1 YybS family protein -
  NSQ62_RS20825 (NSQ62_20825) rpsR 4128435..4128674 (-) 240 WP_188227411.1 30S ribosomal protein S18 -
  NSQ62_RS20830 (NSQ62_20830) ssbA 4128718..4129281 (-) 564 WP_341321918.1 single-stranded DNA-binding protein Machinery gene
  NSQ62_RS20835 (NSQ62_20835) rpsF 4129321..4129611 (-) 291 WP_341321919.1 30S ribosomal protein S6 -
  NSQ62_RS20840 (NSQ62_20840) - 4129787..4130326 (+) 540 WP_341321920.1 DUF3267 domain-containing protein -
  NSQ62_RS20845 (NSQ62_20845) ychF 4130373..4131473 (-) 1101 WP_341321921.1 redox-regulated ATPase YchF -
  NSQ62_RS20850 (NSQ62_20850) - 4131601..4131801 (-) 201 WP_341321922.1 DUF951 domain-containing protein -
  NSQ62_RS20855 (NSQ62_20855) - 4131805..4132695 (-) 891 WP_341321923.1 mechanosensitive ion channel family protein -
  NSQ62_RS20860 (NSQ62_20860) yyaC 4132798..4133421 (+) 624 WP_341321924.1 spore protease YyaC -
  NSQ62_RS20865 (NSQ62_20865) - 4133338..4134045 (-) 708 WP_341321925.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20194.10 Da        Isoelectric Point: 4.7815

>NTDB_id=969717 NSQ62_RS20830 WP_341321918.1 4128718..4129281(-) (ssbA) [Solibacillus sp. FSL H8-0523]
MINRVVLVGRLTKDPELRYTPSGVPMARFTIAVNRTFSSQSGEREADFIGCIAWRKQAENLANFMKKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVIADAVQFLEPRGGANASQGGQAPAASYGGGGNYGGQPTSNQSNQNYGGGQPQESYGSYQQPPQNQ
QNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=969717 NSQ62_RS20830 WP_341321918.1 4128718..4129281(-) (ssbA) [Solibacillus sp. FSL H8-0523]
ATGATTAACCGTGTTGTATTAGTTGGAAGACTAACAAAAGATCCAGAGCTTCGTTACACACCGAGTGGAGTTCCAATGGC
GCGTTTTACAATTGCTGTAAACCGTACTTTTTCGAGCCAATCGGGTGAACGCGAAGCAGATTTCATTGGTTGTATTGCTT
GGAGAAAGCAAGCTGAAAACTTAGCAAACTTCATGAAAAAAGGGAGTTTGATTGGTGTAGAAGGCCGAATTCAAACAGGC
AGCTATGAAGGACAAGATGGTAAGCGTGTCTATACAACGGACGTAATTGCAGACGCTGTGCAGTTCTTAGAACCGCGCGG
AGGAGCAAATGCATCTCAAGGTGGACAAGCACCAGCTGCATCATACGGCGGTGGCGGAAACTATGGTGGGCAACCAACAT
CGAATCAGTCAAACCAAAACTATGGTGGTGGGCAACCACAGGAATCTTATGGTTCTTATCAACAACCACCTCAAAATCAG
CAAAATTATACACGTGTAGATGAAGATCCATTTGCGAATAGCAAAGGACCTATTGAAGTTTCTGAAGACGATTTACCGTT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.787

100

0.551
  ssb Latilactobacillus sakei subsp. sakei 23K

49.733

100

0.497

Multiple sequence alignment