Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ACJWMC_RS00285 Genome accession   NZ_CP177181
Coordinates   59182..59772 (+) Length   196 a.a.
NCBI ID   WP_002889595.1    Uniprot ID   J7TPJ7
Organism   Streptococcus salivarius strain MRD1919     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54182..64772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMC_RS00260 - 54241..54567 (-) 327 WP_002949049.1 DUF3021 domain-containing protein -
  ACJWMC_RS00265 - 54959..55264 (+) 306 WP_002889590.1 hypothetical protein -
  ACJWMC_RS00270 hexB 55316..57253 (+) 1938 WP_002889591.1 DNA mismatch repair endonuclease MutL Machinery gene
  ACJWMC_RS00275 - 57384..57605 (+) 222 WP_037597288.1 hypothetical protein -
  ACJWMC_RS00280 - 57648..58897 (-) 1250 Protein_48 ISL3 family transposase -
  ACJWMC_RS00285 ruvA 59182..59772 (+) 591 WP_002889595.1 Holliday junction branch migration protein RuvA Machinery gene
  ACJWMC_RS00290 - 59781..60335 (+) 555 WP_002889597.1 DNA-3-methyladenine glycosylase I -
  ACJWMC_RS00295 cinA 60432..61697 (+) 1266 WP_002889599.1 competence/damage-inducible protein A Machinery gene
  ACJWMC_RS00300 recA 61738..62877 (+) 1140 WP_002889600.1 recombinase RecA Machinery gene
  ACJWMC_RS00305 spx 63047..63445 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21672.06 Da        Isoelectric Point: 5.6710

>NTDB_id=969665 ACJWMC_RS00285 WP_002889595.1 59182..59772(+) (ruvA) [Streptococcus salivarius strain MRD1919]
MYDYIKGTLVKITAKYIVIEANGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPTETTKATPSQSEGNHQLDEAMEALL
ALGYKAAELKKIKAFFEGTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=969665 ACJWMC_RS00285 WP_002889595.1 59182..59772(+) (ruvA) [Streptococcus salivarius strain MRD1919]
ATGTATGATTACATCAAGGGAACTCTAGTGAAAATTACTGCCAAGTATATTGTTATAGAAGCAAACGGCTTAGGTTATAT
TGTCACTGTAGCGAATCCCTATAGTTTTTCTGACCAGATGAATCAGACTATCCAAGTCTACCTTCATCAGGTTATTAGGG
ATGACGCCCACCTTCTTTTTGGTTTCCATACTGAAGATGAAAAAGAGGTCTTCCTTAAGCTTATTTCAGTTTCTGGAATA
GGTCCGACGACTGCTCTAGCCATTGTTGCTGTAGATGATAATCAAGGCTTGGTTGCTGCCATTGATAATAGTGACATCAA
GTACTTGATGAAGTTTCCAAAGATTGGTAAAAAGACAGCTCAGCAAATGGTTCTAGACTTGGCAGGGAAATTTGCAGAGT
TACCAACAGAAACGACCAAGGCGACACCAAGTCAATCTGAAGGGAATCATCAGTTGGATGAGGCAATGGAAGCCTTGCTT
GCTCTTGGTTATAAAGCTGCAGAACTTAAGAAAATCAAAGCCTTCTTCGAAGGAACTAATGAAACGGCAGAGCAATACAT
TAAATCAGCTCTTAAAATGTTGATGAAATGA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7TPJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.5

100

0.679
  ruvA Streptococcus pneumoniae R6

66.5

100

0.679
  ruvA Streptococcus pneumoniae D39

66.5

100

0.679
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.429