Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   ACJVC4_RS08925 Genome accession   NZ_CP177179
Coordinates   1920573..1922591 (-) Length   672 a.a.
NCBI ID   WP_037598611.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-NRLLH     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1915573..1927591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVC4_RS08895 - 1916809..1917777 (+) 969 WP_002891797.1 asparaginase -
  ACJVC4_RS08900 - 1917781..1917924 (+) 144 WP_002891800.1 hypothetical protein -
  ACJVC4_RS08905 - 1917976..1918188 (-) 213 WP_002884695.1 helix-turn-helix domain-containing protein -
  ACJVC4_RS08910 - 1918198..1918806 (-) 609 WP_002891802.1 DUF2975 domain-containing protein -
  ACJVC4_RS08915 - 1918999..1919436 (-) 438 WP_002891805.1 hypothetical protein -
  ACJVC4_RS08920 - 1920055..1920561 (-) 507 WP_037598464.1 hypothetical protein -
  ACJVC4_RS08925 recG/mmsA 1920573..1922591 (-) 2019 WP_037598611.1 ATP-dependent DNA helicase RecG Machinery gene
  ACJVC4_RS08930 alr 1922724..1923827 (-) 1104 WP_002891812.1 alanine racemase -
  ACJVC4_RS08935 acpS 1923855..1924208 (-) 354 WP_002891813.1 holo-ACP synthase -
  ACJVC4_RS08940 - 1924211..1925242 (-) 1032 WP_002891815.1 3-deoxy-7-phosphoheptulonate synthase -
  ACJVC4_RS08945 - 1925327..1926358 (-) 1032 WP_002891816.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 75204.42 Da        Isoelectric Point: 5.5945

>NTDB_id=969508 ACJVC4_RS08925 WP_037598611.1 1920573..1922591(-) (recG/mmsA) [Streptococcus salivarius strain MRD-NRLLH]
MIQLDSPIADLKGFGPKSAEKFTKLDLYTVGDLLLYFPFRYEDFKSKSIFELMDGEKAVITGTVVTPANVQYYGFKRNRL
SFKIKQGEAVIAISFFNQPYLVDKIEMGAEVAIFGKWDQKKSAVTGMKVLAQVEDDMQPVYHVAQGVSQAQLIKAIKAAF
DSGALNLLEENLPQVLLDKYRLMGRQEAVRAMHFPKDLAEYKQALRRTKFEELFYFQMNLQVLKAENKSETNGLAIAYDE
AKIKAKIAALPFPLTEAQQRSLSEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYGAYTAGFQSALMVPTEILAEQHYQ
SLQGLFPELEVVLLTSGMKAADKKVALSKIESGEAQMIVGTHSLIQDAVTYHSLGLVITDEQHRFGVNQRRIFREKGDNP
DVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLTWIKGELEKDAQVYFISPLIEESEALDLK
NAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKDRKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQL
RGRVGRGDKQSYCVLVANPKNDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEAR
RVASQIVSDPNWRENPEWQVLGAHLRSQGEFD

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=969508 ACJVC4_RS08925 WP_037598611.1 1920573..1922591(-) (recG/mmsA) [Streptococcus salivarius strain MRD-NRLLH]
ATGATTCAACTAGATTCACCAATTGCGGATTTGAAAGGCTTTGGGCCTAAGTCCGCTGAAAAATTTACCAAATTAGATTT
ATACACGGTTGGGGACCTCTTGCTTTATTTTCCTTTCCGATATGAGGATTTTAAGAGTAAGTCTATCTTTGAACTGATGG
ATGGCGAAAAGGCTGTTATTACGGGAACAGTGGTGACGCCTGCCAATGTGCAGTATTATGGCTTTAAACGGAATCGTCTG
AGTTTTAAAATCAAGCAAGGAGAGGCTGTGATTGCCATTAGTTTCTTCAACCAACCTTATCTTGTGGACAAGATTGAGAT
GGGGGCAGAAGTGGCTATTTTTGGCAAATGGGACCAGAAGAAGTCTGCTGTGACTGGTATGAAAGTCCTGGCTCAAGTTG
AGGACGATATGCAGCCAGTCTACCATGTGGCCCAGGGTGTTAGTCAGGCCCAACTGATAAAGGCCATAAAGGCAGCTTTT
GATAGTGGGGCACTTAATTTGTTGGAGGAAAATCTCCCTCAGGTGCTGCTGGACAAGTACCGTCTCATGGGACGTCAAGA
GGCTGTGCGTGCCATGCATTTTCCGAAAGATTTGGCTGAATATAAGCAGGCTCTACGTAGGACCAAGTTTGAGGAGCTCT
TTTATTTCCAGATGAATTTACAGGTGCTGAAGGCTGAAAATAAGTCCGAAACCAATGGTCTAGCAATTGCTTACGATGAA
GCCAAAATCAAAGCTAAAATTGCAGCATTACCATTCCCCTTAACAGAGGCCCAACAGCGTAGTTTATCGGAAATCCTAGC
TGATATGAAATCTGGGGCTCATATGAACCGTCTCTTGCAAGGAGATGTGGGCTCAGGGAAAACAGTTATCGCTAGCTTGG
CTATGTATGGGGCCTATACGGCAGGATTTCAGTCTGCCCTCATGGTACCGACGGAAATCTTAGCAGAGCAGCATTATCAG
AGTTTACAGGGGCTTTTTCCTGAGTTAGAGGTAGTGCTCCTAACTTCTGGAATGAAGGCGGCGGATAAGAAAGTAGCCCT
TTCCAAAATCGAGTCTGGGGAGGCTCAGATGATTGTGGGAACCCACTCGTTGATTCAAGATGCAGTGACTTATCATAGTC
TTGGGCTAGTCATTACTGATGAACAGCACCGATTTGGAGTTAATCAGCGTCGTATTTTCCGTGAGAAGGGTGACAATCCT
GATGTCCTTATGATGACAGCGACACCTATCCCTAGGACTTTGGCGATCACTGCCTTTGGGGAGATGGATGTATCTATCAT
TGACCAGATGCCAGCTGGACGTAAGCCCATTATTACCCGTTGGGTCAAACATGAGCAGTTAGATACCGTACTGACTTGGA
TTAAGGGTGAGTTGGAAAAAGACGCTCAGGTCTATTTTATTTCACCTTTGATTGAAGAGTCTGAGGCTCTTGATTTGAAA
AATGCGGTGGCTCTTCATCAGGAACTCACAGAGTTCTTTGGGGATTCAGCTACAGTAGCTCTGATGCACGGTCGTATGAA
AAATGATGAAAAAGACCAAATTATGCAAGATTTCAAGGACAGAAAATCTCAGATTTTAGTATCAACTACAGTTATCGAAG
TAGGTGTTAACGTGCCAAATGCTACAGTTATGGTCATTATGGATGCGGATCGTTTTGGGCTTAGCCAGCTTCACCAGCTT
CGAGGGCGTGTAGGTCGTGGCGATAAGCAGTCCTACTGTGTTTTGGTGGCTAATCCTAAAAATGATACTGGTAAAAAACG
CATGCAGGCCATGTGTGAGACCACGGATGGCTTTGTTCTAGCTGAGGAGGATCTTAAAATGCGTGGCTCAGGTGAAATCT
TTGGGACACGTCAGTCAGGTATTCCTGAATTTCAGGTGGCCGATATTGTGGAAGACTACAATATCTTAGAGGAAGCCAGA
CGGGTGGCTAGCCAAATTGTATCTGACCCTAACTGGCGAGAGAATCCTGAATGGCAGGTGCTAGGAGCACATTTGAGAAG
CCAAGGTGAGTTTGATTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(594-667)

DEAD/DEAH box helicase (DEAD)

(255-412)

Helicase conserved C-terminal domain (Helicase_C)

(459-567)

RecG wedge domain (RecG_wedge)

(11-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

72.131

99.851

0.72
  recG/mmsA Streptococcus pneumoniae R36A

72.131

99.851

0.72
  recG Bacillus subtilis subsp. subtilis str. 168

49.48

100

0.496
  recG Neisseria meningitidis strain C311

39.552

99.702

0.394