Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   MHH25_RS02200 Genome accession   NZ_CP150283
Coordinates   460107..460820 (+) Length   237 a.a.
NCBI ID   WP_036616668.1    Uniprot ID   A0AAN4L6C1
Organism   Paenibacillus sp. FSL H3-0457     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 455107..465820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH25_RS02175 (MHH25_02175) - 455815..457071 (+) 1257 WP_340019006.1 DUF445 domain-containing protein -
  MHH25_RS02180 (MHH25_02180) - 457157..457510 (-) 354 WP_036616662.1 YxeA family protein -
  MHH25_RS02185 (MHH25_02185) - 457540..458271 (-) 732 WP_036673135.1 ABC transporter permease -
  MHH25_RS02190 (MHH25_02190) - 458284..459033 (-) 750 WP_340019007.1 ABC transporter permease -
  MHH25_RS02195 (MHH25_02195) - 459033..459950 (-) 918 WP_036616824.1 ABC transporter ATP-binding protein -
  MHH25_RS02200 (MHH25_02200) scnR 460107..460820 (+) 714 WP_036616668.1 response regulator transcription factor Regulator
  MHH25_RS02205 (MHH25_02205) - 460820..462202 (+) 1383 WP_340019009.1 HAMP domain-containing sensor histidine kinase -
  MHH25_RS02210 (MHH25_02210) - 462479..462661 (+) 183 WP_036616672.1 type A2 lanthipeptide -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27063.53 Da        Isoelectric Point: 5.2460

>NTDB_id=969429 MHH25_RS02200 WP_036616668.1 460107..460820(+) (scnR) [Paenibacillus sp. FSL H3-0457]
MELLKNKKILIVDDEPEIREMIERFLRKEGFFRIYTAGNFVNALAVCRLEKPDAAILDVMLPDGDGFSLLSSIRSFSDMP
VLFLSARGEDEDRLLGLGLGADDYMVKPFLPRELILRLMAILKRVYASNTVERLPVFRLGGQTIDLESAVVQRTDRELPL
TAKEHAILIKLYENQGRIVTSDALCQAVWGDESYGYENTLMVHVRRIREKIEEDPSKPIFLLTVRGLGYKLMVQESR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=969429 MHH25_RS02200 WP_036616668.1 460107..460820(+) (scnR) [Paenibacillus sp. FSL H3-0457]
ATGGAATTATTGAAGAATAAGAAAATATTGATCGTAGATGATGAGCCCGAAATACGGGAAATGATTGAACGTTTTTTACG
GAAAGAAGGTTTTTTCCGGATCTATACGGCTGGTAACTTCGTGAATGCCTTGGCGGTATGCAGACTTGAAAAGCCGGATG
CAGCTATTCTGGATGTGATGCTTCCGGATGGAGATGGGTTCTCTCTGCTCTCTTCGATCCGGTCATTCTCGGACATGCCT
GTTCTGTTCTTGTCTGCACGTGGTGAAGATGAGGATCGACTGCTCGGTCTGGGGCTTGGAGCAGATGATTATATGGTCAA
GCCCTTTCTGCCAAGAGAGTTGATTCTCAGGCTGATGGCTATTCTGAAGCGGGTATATGCCTCCAATACGGTGGAGAGAT
TGCCTGTATTTCGTTTGGGTGGACAAACCATTGATCTGGAGAGCGCTGTTGTACAGAGGACAGACAGGGAGCTTCCATTG
ACAGCTAAGGAGCATGCCATACTGATCAAGTTGTATGAGAATCAGGGCCGAATTGTAACCAGTGATGCCCTGTGTCAAGC
CGTCTGGGGAGACGAGAGTTATGGGTATGAGAATACCCTGATGGTGCATGTTCGGCGAATCCGGGAGAAGATTGAGGAAG
ATCCATCCAAACCGATATTTCTGCTGACGGTACGGGGACTTGGTTATAAATTGATGGTTCAGGAGTCTAGGTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.218

96.624

0.485
  micA Streptococcus pneumoniae Cp1015

40.87

97.046

0.397
  vicR Streptococcus mutans UA159

40.175

96.624

0.388

Multiple sequence alignment