Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OO966_RS00980 Genome accession   NZ_AP026780
Coordinates   208848..210575 (+) Length   575 a.a.
NCBI ID   WP_370466047.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain 04Ya311     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 203848..215575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO966_RS00960 (PDY_01820) pilM 206077..207075 (+) 999 WP_069532485.1 type IV pilus biogenesis protein PilM -
  OO966_RS00965 (PDY_01830) - 207072..207713 (+) 642 WP_068945318.1 PilN domain-containing protein -
  OO966_RS00970 (PDY_01840) - 207710..208300 (+) 591 WP_068945317.1 type 4a pilus biogenesis protein PilO -
  OO966_RS00975 (PDY_01850) - 208309..208824 (+) 516 WP_036764704.1 pilus assembly protein PilP -
  OO966_RS00980 (PDY_01860) pilQ 208848..210575 (+) 1728 WP_370466047.1 type IV pilus secretin PilQ Machinery gene
  OO966_RS00985 (PDY_01870) aroK 210905..211423 (+) 519 WP_036765246.1 shikimate kinase AroK -
  OO966_RS00990 (PDY_01880) aroB 211453..212532 (+) 1080 WP_264954741.1 3-dehydroquinate synthase -
  OO966_RS00995 (PDY_01890) - 212547..214055 (+) 1509 WP_264954742.1 SPOR domain-containing protein -
  OO966_RS01000 (PDY_01900) dam 214163..215005 (+) 843 WP_005302664.1 adenine-specific DNA-methyltransferase -
  OO966_RS01005 (PDY_01910) - 214989..215186 (-) 198 WP_264954743.1 DUF2970 domain-containing protein -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 62738.23 Da        Isoelectric Point: 4.9029

>NTDB_id=96937 OO966_RS00980 WP_370466047.1 208848..210575(+) (pilQ) [Photobacterium damselae subsp. damselae strain 04Ya311]
MKRMLSVSLGWQRCWVVMLCCWLGLSQAAIAAGMNIVNNQITDLDFKRDNRGRGVLTIQLAKPQSLVDMRRSGKQLHIDI
FDTAIKDDMLYVLDVVDFATVVRSIETFRTEKGSKLILNMAGVFDYDYQLKGSRLEVVLNAQKKKASSTAKAKQGKIDYK
GKPISINFQDVPVRNVLQLVAEYNDFNLVVSDTVQGNVTLRLDDVPWPQVLDIILQSKGLDKRVQGSVVLIAPKSELATN
ERQEMEAKRKEDELASLRSELIQINYAKAGDIADLLLGTKDGVSMLSQRGSLHVDERTNAIIIKDIPESIDSIEEIITAL
DIPVKQVQIEARIVTVDEGDIDELGVRWGVVNQNGSTTIGGSIEGNLASSGLLGDDATVDDFLNVNLGAITPGASSIAFQ
VAKLGDILLDLELSALQAESKAEIISSPRLVTTNKKAAYIEQGTEIPYLEAASSGAVSVDFKKAVLSLMVTPQITPDDKL
VLDLLVTQDKVGETVVTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIYQHQVNNSVRKVPLLGDIPGLGVLFRHKLQEMG
KRELLIFVTPKIITQ

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=96937 OO966_RS00980 WP_370466047.1 208848..210575(+) (pilQ) [Photobacterium damselae subsp. damselae strain 04Ya311]
ATGAAAAGGATGTTATCGGTCAGCTTGGGTTGGCAACGTTGTTGGGTAGTTATGTTGTGCTGTTGGCTTGGTCTCTCCCA
AGCTGCCATTGCTGCTGGCATGAATATTGTGAATAACCAAATCACCGACTTAGATTTTAAGCGTGATAACCGTGGACGAG
GTGTGCTCACTATTCAGTTAGCCAAACCTCAATCTTTGGTTGATATGCGCCGTTCAGGGAAGCAATTACACATCGATATC
TTTGATACCGCGATTAAAGATGACATGTTGTATGTACTCGATGTGGTCGATTTTGCAACGGTTGTCCGTTCGATTGAAAC
ATTTCGCACCGAGAAAGGCAGCAAACTTATTCTCAATATGGCTGGCGTGTTTGATTATGATTACCAATTAAAAGGCTCTC
GTCTTGAAGTCGTTTTGAACGCCCAGAAAAAGAAAGCCAGCAGTACAGCCAAGGCTAAGCAAGGCAAAATTGATTATAAA
GGTAAGCCCATCTCCATTAACTTCCAAGATGTTCCTGTGCGTAACGTGTTGCAGTTGGTTGCCGAATATAATGATTTTAA
TCTCGTGGTTTCCGATACTGTGCAGGGTAATGTGACCTTACGTCTTGATGATGTGCCTTGGCCGCAAGTGCTTGATATTA
TTTTGCAATCAAAAGGCTTGGATAAACGAGTTCAAGGTTCTGTGGTACTGATTGCGCCAAAATCTGAGTTGGCAACCAAT
GAGCGTCAAGAGATGGAAGCCAAACGTAAAGAAGATGAGTTAGCTTCGCTTCGTTCGGAGCTGATTCAAATTAATTACGC
TAAAGCAGGAGATATCGCAGACCTTTTACTCGGAACGAAAGATGGAGTCAGTATGCTATCTCAACGCGGGTCTTTGCATG
TTGATGAGCGTACTAATGCCATAATCATTAAAGATATTCCTGAGAGTATTGATAGCATTGAAGAGATTATCACGGCACTA
GATATTCCCGTTAAACAGGTTCAGATAGAAGCTCGTATTGTTACTGTTGATGAAGGGGATATTGACGAGTTAGGGGTACG
TTGGGGTGTCGTTAATCAAAACGGTAGTACAACCATTGGGGGCTCAATTGAAGGTAACTTGGCCAGTTCGGGCTTATTGG
GTGATGACGCAACTGTTGATGATTTCTTAAATGTAAATTTAGGTGCAATTACTCCTGGGGCATCGAGTATTGCATTTCAG
GTGGCAAAACTGGGCGATATTTTGCTCGATCTTGAATTATCCGCTCTACAGGCAGAATCAAAAGCAGAGATTATTTCTAG
TCCTCGATTAGTAACCACCAATAAAAAAGCGGCCTACATCGAACAAGGTACAGAGATCCCTTATTTAGAAGCGGCATCTA
GTGGTGCGGTATCGGTAGACTTTAAAAAGGCCGTATTGAGTTTGATGGTCACACCACAAATTACCCCTGATGATAAATTG
GTGCTCGATCTACTGGTAACGCAAGATAAAGTAGGGGAAACGGTTGTTACCGGAACCGGAGAAGCGGTCGCTATCGATAC
TCAACGAATTGGCACGCAAGTTTTGGTCAATAATGGCGAGACTGTAGTCTTAGGGGGTATCTATCAGCATCAGGTGAATA
ATTCTGTCCGTAAAGTCCCTTTGTTGGGCGATATTCCAGGATTGGGCGTATTGTTCCGTCATAAGCTGCAAGAGATGGGC
AAGCGTGAACTGTTGATTTTCGTTACACCAAAAATTATCACCCAGTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(186-234)

Bacterial type II/III secretion system short domain (Secretin_N)

(260-326)

Bacterial type II and III secretion system protein (Secretin)

(415-573)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

61.121

99.304

0.607
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

61.121

99.304

0.607
  pilQ Vibrio campbellii strain DS40M4

60.932

97.043

0.591
  pilQ Legionella pneumophila strain Lp02

43.015

94.609

0.407
  pilQ Legionella pneumophila strain ERS1305867

43.015

94.609

0.407
  pilQ Pseudomonas aeruginosa PAK

41.281

97.739

0.403
  comQ Acinetobacter baylyi ADP1

40.388

98.609

0.398
  pilQ Acinetobacter baumannii D1279779

38.966

100

0.393
  pilQ Acinetobacter baumannii strain A118

38.966

100

0.393

Multiple sequence alignment