Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   MHH79_RS13175 Genome accession   NZ_CP150275
Coordinates   2532461..2533078 (-) Length   205 a.a.
NCBI ID   WP_340034614.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0993     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2527461..2538078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH79_RS13145 (MHH79_13145) rpsT 2527763..2528029 (+) 267 WP_003229989.1 30S ribosomal protein S20 -
  MHH79_RS13150 (MHH79_13150) holA 2528044..2529087 (-) 1044 WP_029317888.1 DNA polymerase III subunit delta -
  MHH79_RS13155 (MHH79_13155) - 2529127..2529240 (-) 114 WP_134975484.1 hypothetical protein -
  MHH79_RS13160 (MHH79_13160) - 2529317..2529451 (+) 135 WP_003229983.1 YqzM family protein -
  MHH79_RS13165 (MHH79_13165) comEC 2529491..2531821 (-) 2331 WP_063335453.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MHH79_RS13170 (MHH79_13170) - 2531825..2532394 (-) 570 WP_003229978.1 ComE operon protein 2 -
  MHH79_RS13175 (MHH79_13175) comEA 2532461..2533078 (-) 618 WP_340034614.1 competence protein ComEA Machinery gene
  MHH79_RS13180 (MHH79_13180) comER 2533162..2533983 (+) 822 WP_063335455.1 late competence protein ComER -
  MHH79_RS13185 (MHH79_13185) - 2534049..2534792 (-) 744 WP_015384134.1 class I SAM-dependent methyltransferase -
  MHH79_RS13190 (MHH79_13190) rsfS 2534789..2535145 (-) 357 WP_041333759.1 ribosome silencing factor -
  MHH79_RS13195 (MHH79_13195) yqeK 2535163..2535723 (-) 561 WP_015483448.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  MHH79_RS13200 (MHH79_13200) - 2535713..2536282 (-) 570 WP_004398676.1 nicotinate-nucleotide adenylyltransferase -
  MHH79_RS13205 (MHH79_13205) yhbY 2536294..2536584 (-) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  MHH79_RS13210 (MHH79_13210) aroE 2536578..2537420 (-) 843 WP_309530224.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21761.61 Da        Isoelectric Point: 5.3936

>NTDB_id=969121 MHH79_RS13175 WP_340034614.1 2532461..2533078(-) (comEA) [Bacillus sp. FSL K6-0993]
MNWLNQHKKAIILAASAAVFTAIMIVLATGKNKEPVKQAVPTETENTVVKQEANNDKSNETIVIDIKGAVQHPGVYEMRT
GDRVSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGGGVSVQSDGGKGALVNINTATLEELQGISGV
GPSKAKAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=969121 MHH79_RS13175 WP_340034614.1 2532461..2533078(-) (comEA) [Bacillus sp. FSL K6-0993]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTATTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCGTTCT
GGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGACAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACAAGTCAAACGAAACAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGAACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA
GATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTGGCGGAGTGTCTG
TCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG
GGGCCATCCAAAGCTAAAGCTATTATTGCATACCGGGAAGAGAACGGTCGTTTCCAAACAATTGAAGATATTACTAAGGT
TTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(63-118)

Helix-hairpin-helix motif (HHH_3)

(142-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

98.049

100

0.98
  comEA Staphylococcus aureus MW2

37.273

100

0.4
  comEA Staphylococcus aureus N315

35.909

100

0.385

Multiple sequence alignment