Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   MHH79_RS12720 Genome accession   NZ_CP150275
Coordinates   2450229..2450660 (-) Length   143 a.a.
NCBI ID   WP_015384089.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0993     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2445229..2455660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH79_RS12670 (MHH79_12670) sinI 2445424..2445597 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  MHH79_RS12675 (MHH79_12675) sinR 2445631..2445966 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  MHH79_RS12680 (MHH79_12680) tasA 2446059..2446844 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  MHH79_RS12685 (MHH79_12685) - 2446908..2447480 (-) 573 WP_080030740.1 signal peptidase I -
  MHH79_RS12690 (MHH79_12690) tapA 2447464..2448225 (-) 762 WP_063335290.1 amyloid fiber anchoring/assembly protein TapA -
  MHH79_RS12695 (MHH79_12695) - 2448495..2448821 (+) 327 WP_047183570.1 YqzG/YhdC family protein -
  MHH79_RS12700 (MHH79_12700) - 2448863..2449042 (-) 180 WP_003230176.1 YqzE family protein -
  MHH79_RS12705 (MHH79_12705) comGG 2449114..2449488 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  MHH79_RS12710 (MHH79_12710) comGF 2449489..2449872 (-) 384 WP_063335292.1 ComG operon protein ComGF Machinery gene
  MHH79_RS12715 (MHH79_12715) comGE 2449898..2450245 (-) 348 WP_063335293.1 ComG operon protein 5 Machinery gene
  MHH79_RS12720 (MHH79_12720) comGD 2450229..2450660 (-) 432 WP_015384089.1 comG operon protein ComGD Machinery gene
  MHH79_RS12725 (MHH79_12725) comGC 2450650..2450946 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  MHH79_RS12730 (MHH79_12730) comGB 2450960..2451997 (-) 1038 WP_047182873.1 comG operon protein ComGB Machinery gene
  MHH79_RS12735 (MHH79_12735) comGA 2451984..2453054 (-) 1071 WP_015483431.1 competence protein ComGA Machinery gene
  MHH79_RS12740 (MHH79_12740) corA 2453464..2454417 (-) 954 WP_015483432.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16064.60 Da        Isoelectric Point: 9.6754

>NTDB_id=969114 MHH79_RS12720 WP_015384089.1 2450229..2450660(-) (comGD) [Bacillus sp. FSL K6-0993]
MNIKLNEEEGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVNGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=969114 MHH79_RS12720 WP_015384089.1 2450229..2450660(-) (comGD) [Bacillus sp. FSL K6-0993]
TTGAACATTAAATTAAACGAGGAGGAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATAGAACGCCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAATGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

97.902

100

0.979

Multiple sequence alignment