Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   NSQ20_RS02140 Genome accession   NZ_CP150272
Coordinates   450579..451292 (+) Length   237 a.a.
NCBI ID   WP_036616668.1    Uniprot ID   A0AAN4L6C1
Organism   Paenibacillus sp. FSL K6-1122     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 445579..456292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ20_RS02115 (NSQ20_02115) - 446288..447544 (+) 1257 WP_036616660.1 DUF445 domain-containing protein -
  NSQ20_RS02120 (NSQ20_02120) - 447629..447982 (-) 354 WP_036616662.1 YxeA family protein -
  NSQ20_RS02125 (NSQ20_02125) - 448012..448743 (-) 732 WP_036616664.1 ABC transporter permease -
  NSQ20_RS02130 (NSQ20_02130) - 448756..449505 (-) 750 WP_036616666.1 ABC transporter permease -
  NSQ20_RS02135 (NSQ20_02135) - 449505..450422 (-) 918 WP_036616824.1 ABC transporter ATP-binding protein -
  NSQ20_RS02140 (NSQ20_02140) scnR 450579..451292 (+) 714 WP_036616668.1 response regulator transcription factor Regulator
  NSQ20_RS02145 (NSQ20_02145) - 451292..452674 (+) 1383 WP_036616670.1 HAMP domain-containing sensor histidine kinase -
  NSQ20_RS02150 (NSQ20_02150) - 452951..453133 (+) 183 WP_036616672.1 type A2 lanthipeptide -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27063.53 Da        Isoelectric Point: 5.2460

>NTDB_id=968945 NSQ20_RS02140 WP_036616668.1 450579..451292(+) (scnR) [Paenibacillus sp. FSL K6-1122]
MELLKNKKILIVDDEPEIREMIERFLRKEGFFRIYTAGNFVNALAVCRLEKPDAAILDVMLPDGDGFSLLSSIRSFSDMP
VLFLSARGEDEDRLLGLGLGADDYMVKPFLPRELILRLMAILKRVYASNTVERLPVFRLGGQTIDLESAVVQRTDRELPL
TAKEHAILIKLYENQGRIVTSDALCQAVWGDESYGYENTLMVHVRRIREKIEEDPSKPIFLLTVRGLGYKLMVQESR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=968945 NSQ20_RS02140 WP_036616668.1 450579..451292(+) (scnR) [Paenibacillus sp. FSL K6-1122]
ATGGAATTATTGAAGAATAAGAAAATATTGATCGTAGATGATGAGCCCGAAATACGGGAAATGATTGAACGTTTTTTACG
GAAAGAAGGTTTTTTCCGGATCTATACGGCTGGTAACTTCGTGAATGCCTTGGCGGTATGCAGACTTGAAAAGCCGGATG
CAGCTATTCTGGATGTGATGCTTCCGGATGGAGATGGGTTCTCTCTGCTCTCTTCGATCCGGTCATTCTCGGACATGCCT
GTTCTGTTCTTGTCTGCACGTGGTGAAGATGAGGATCGACTGCTCGGTCTGGGGCTTGGAGCAGATGATTATATGGTCAA
GCCCTTTCTGCCAAGAGAGTTGATTCTCAGGCTGATGGCTATTCTGAAGCGGGTATATGCCTCCAATACGGTGGAGAGAT
TGCCTGTATTTCGTTTGGGTGGACAAACCATTGATCTGGAGAGCGCTGTTGTACAGAGGACAGACAGGGAGCTTCCATTG
ACAGCTAAGGAGCATGCCATACTGATCAAGTTGTATGAGAATCAGGGCCGAATTGTAACCAGTGATGCCCTGTGTCAAGC
CGTCTGGGGAGACGAGAGTTATGGGTATGAGAATACCCTGATGGTGCATGTTCGGCGAATCCGGGAGAAGATTGAGGAAG
ATCCATCCAAACCGATATTTCTGCTGACGGTACGGGGACTTGGTTATAAATTGATGGTTCAGGAGTCTAGGTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.218

96.624

0.485
  micA Streptococcus pneumoniae Cp1015

40.87

97.046

0.397
  vicR Streptococcus mutans UA159

40.175

96.624

0.388

Multiple sequence alignment