Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NYE54_RS28140 Genome accession   NZ_CP150269
Coordinates   6173018..6173458 (-) Length   146 a.a.
NCBI ID   WP_339267796.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL K6-1330     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 6168018..6178458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE54_RS28120 (NYE54_28120) - 6169576..6170463 (-) 888 WP_098748752.1 carbohydrate ABC transporter permease -
  NYE54_RS28125 (NYE54_28125) - 6170478..6171440 (-) 963 WP_098748753.1 ABC transporter permease subunit -
  NYE54_RS28130 (NYE54_28130) - 6171914..6172246 (-) 333 Protein_5563 sensor histidine kinase -
  NYE54_RS28135 (NYE54_28135) yjcZ 6172412..6172522 (-) 111 WP_083659774.1 sporulation protein YjcZ -
  NYE54_RS28140 (NYE54_28140) nucA/comI 6173018..6173458 (-) 441 WP_339267796.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NYE54_RS28145 (NYE54_28145) groL 6173686..6175314 (-) 1629 WP_076324708.1 chaperonin GroEL -
  NYE54_RS28150 (NYE54_28150) groES 6175377..6175658 (-) 282 WP_006212454.1 co-chaperone GroES -
  NYE54_RS28155 (NYE54_28155) - 6175936..6176754 (-) 819 WP_339267798.1 nucleotidyltransferase domain-containing protein -
  NYE54_RS28160 (NYE54_28160) tatC 6177054..6177827 (-) 774 WP_339267800.1 twin-arginine translocase subunit TatC -
  NYE54_RS28165 (NYE54_28165) - 6177900..6178136 (-) 237 WP_076324711.1 twin-arginine translocase TatA/TatE family subunit -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16157.07 Da        Isoelectric Point: 4.3001

>NTDB_id=968879 NYE54_RS28140 WP_339267796.1 6173018..6173458(-) (nucA/comI) [Paenibacillus sp. FSL K6-1330]
MKKLFLKFGTAVLSLLVVWLVLNYFPELDDIDINPPPSGTVVELEFPADRYPETADHIQKAIESGHSEVCTIDRTGADDN
RSSSLKGIPTKKGYDRDEWPMAMCAEGGDGASVEYIDPSDNRGAGSWIGNYLEGYPDGTQVHFIFR

Nucleotide


Download         Length: 441 bp        

>NTDB_id=968879 NYE54_RS28140 WP_339267796.1 6173018..6173458(-) (nucA/comI) [Paenibacillus sp. FSL K6-1330]
ATGAAAAAGTTATTCTTGAAGTTTGGAACAGCGGTCTTATCCTTGTTAGTGGTTTGGTTGGTCCTTAATTATTTTCCGGA
GCTAGATGACATCGATATAAACCCACCACCATCGGGTACCGTTGTCGAATTGGAGTTTCCAGCGGATAGATATCCTGAGA
CAGCGGATCACATACAAAAGGCCATTGAATCCGGCCATTCCGAAGTTTGTACCATTGATCGAACTGGTGCAGATGATAAC
AGAAGTTCTTCGCTAAAAGGAATCCCTACAAAAAAAGGATATGATCGGGATGAGTGGCCGATGGCCATGTGTGCCGAAGG
CGGGGACGGTGCAAGTGTCGAATACATAGATCCATCTGACAATCGAGGAGCGGGAAGCTGGATAGGTAACTATTTGGAGG
GATACCCGGACGGTACCCAAGTACATTTCATTTTTAGATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(50-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.903

70.548

0.493

Multiple sequence alignment