Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   NYE54_RS19255 Genome accession   NZ_CP150269
Coordinates   4287033..4287746 (-) Length   237 a.a.
NCBI ID   WP_215162392.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL K6-1330     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4282033..4292746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE54_RS19240 (NYE54_19240) - 4282977..4284350 (-) 1374 WP_339265424.1 extracellular solute-binding protein -
  NYE54_RS19245 (NYE54_19245) - 4284596..4285468 (+) 873 WP_339265426.1 AraC family transcriptional regulator -
  NYE54_RS19250 (NYE54_19250) - 4285645..4287033 (-) 1389 WP_339265428.1 HAMP domain-containing sensor histidine kinase -
  NYE54_RS19255 (NYE54_19255) scnR 4287033..4287746 (-) 714 WP_215162392.1 response regulator transcription factor Regulator
  NYE54_RS19260 (NYE54_19260) - 4287899..4288822 (+) 924 WP_339265432.1 ABC transporter ATP-binding protein -
  NYE54_RS19265 (NYE54_19265) - 4288819..4289571 (+) 753 WP_339273567.1 ABC transporter permease -
  NYE54_RS19270 (NYE54_19270) - 4289583..4290314 (+) 732 WP_339265434.1 ABC transporter permease -
  NYE54_RS19275 (NYE54_19275) - 4290724..4291668 (-) 945 WP_339265436.1 copper amine oxidase N-terminal domain-containing protein -
  NYE54_RS19280 (NYE54_19280) - 4291818..4292639 (-) 822 WP_339265438.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27147.53 Da        Isoelectric Point: 5.2306

>NTDB_id=968874 NYE54_RS19255 WP_215162392.1 4287033..4287746(-) (scnR) [Paenibacillus sp. FSL K6-1330]
MDLIKNKKILIVDDEPEIREMIERFLRREGFFRIYTAGNFSNALSVCRSEKPDAAILDIMLPDGDGFSLLSSIRSFTDMP
VLFLSARGEDEDRLLGLGLGADDYMVKPFLPRELILRLMAILKRVYASNIVERLPVFRLGALTVDLDSAVVLREHKEFSL
TAKEHSILMKLYENQGRIVTSDALCQAVWGDEIYGYENTLMVHVRRIREKIEEDPSNPVYLLTVRGLGYKLMTQESR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=968874 NYE54_RS19255 WP_215162392.1 4287033..4287746(-) (scnR) [Paenibacillus sp. FSL K6-1330]
TTGGACTTGATAAAGAATAAAAAAATACTGATTGTTGACGACGAGCCTGAAATACGGGAGATGATTGAACGTTTCCTACG
AAGAGAAGGCTTCTTCCGGATCTATACTGCCGGCAATTTCTCGAATGCCCTGTCTGTATGCAGATCGGAGAAGCCAGATG
CGGCCATATTGGATATCATGCTGCCGGATGGAGACGGCTTTTCGCTACTTTCATCCATCCGGTCGTTTACGGACATGCCT
GTACTGTTTTTGTCTGCGCGAGGTGAAGATGAAGATCGGCTGCTCGGGCTAGGCTTGGGCGCTGATGATTATATGGTCAA
GCCCTTTTTGCCCAGAGAACTTATTCTCCGACTGATGGCTATTTTGAAGCGGGTATATGCCTCCAACATCGTAGAACGGT
TACCTGTATTTCGGTTGGGTGCTCTAACGGTAGATTTGGATAGCGCTGTCGTACTAAGGGAGCACAAAGAATTCTCGTTG
ACTGCCAAGGAGCACTCCATACTGATGAAGCTGTATGAGAATCAGGGCCGGATCGTAACCAGTGACGCTTTATGCCAAGC
CGTATGGGGTGATGAGATTTATGGTTATGAGAACACTTTGATGGTGCATGTTCGACGCATTCGGGAGAAAATCGAGGAAG
ATCCATCAAATCCGGTGTATTTGTTAACCGTGCGTGGACTCGGGTATAAACTCATGACACAGGAGTCCCGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.661

95.781

0.485
  vicR Streptococcus mutans UA159

39.914

98.312

0.392
  micA Streptococcus pneumoniae Cp1015

40.789

96.203

0.392

Multiple sequence alignment