Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MHI44_RS08550 Genome accession   NZ_CP150268
Coordinates   1619619..1620308 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. FSL K6-1366     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1614619..1625308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI44_RS08515 (MHI44_08515) flgN 1614800..1615282 (-) 483 WP_014478127.1 flagellar protein FlgN -
  MHI44_RS08520 (MHI44_08520) flgM 1615298..1615564 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHI44_RS08525 (MHI44_08525) - 1615645..1616064 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MHI44_RS08530 (MHI44_08530) comFC 1616137..1616859 (-) 723 WP_339203321.1 comF operon protein ComFC Machinery gene
  MHI44_RS08535 (MHI44_08535) comFB 1616823..1617119 (-) 297 WP_014478130.1 late competence protein ComFB -
  MHI44_RS08540 (MHI44_08540) comFA 1617179..1618570 (-) 1392 WP_070547860.1 ATP-dependent helicase ComFA Machinery gene
  MHI44_RS08545 (MHI44_08545) - 1618676..1619521 (-) 846 WP_003244125.1 DegV family protein -
  MHI44_RS08550 (MHI44_08550) degU 1619619..1620308 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MHI44_RS08555 (MHI44_08555) degS 1620391..1621548 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  MHI44_RS08560 (MHI44_08560) - 1621765..1622418 (+) 654 WP_003227979.1 YigZ family protein -
  MHI44_RS08565 (MHI44_08565) tagV 1622418..1623593 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  MHI44_RS08570 (MHI44_08570) - 1623666..1624742 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=968815 MHI44_RS08550 WP_003219701.1 1619619..1620308(-) (degU) [Bacillus sp. FSL K6-1366]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=968815 MHI44_RS08550 WP_003219701.1 1619619..1620308(-) (degU) [Bacillus sp. FSL K6-1366]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment