Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MHI44_RS08530 Genome accession   NZ_CP150268
Coordinates   1616137..1616859 (-) Length   240 a.a.
NCBI ID   WP_339203321.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1366     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1611137..1621859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI44_RS08495 (MHI44_08495) fliW 1611277..1611708 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  MHI44_RS08500 (MHI44_08500) - 1611729..1612304 (-) 576 WP_015384781.1 DUF6470 family protein -
  MHI44_RS08505 (MHI44_08505) flgL 1612351..1613247 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  MHI44_RS08510 (MHI44_08510) flgK 1613258..1614781 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  MHI44_RS08515 (MHI44_08515) flgN 1614800..1615282 (-) 483 WP_014478127.1 flagellar protein FlgN -
  MHI44_RS08520 (MHI44_08520) flgM 1615298..1615564 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHI44_RS08525 (MHI44_08525) - 1615645..1616064 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MHI44_RS08530 (MHI44_08530) comFC 1616137..1616859 (-) 723 WP_339203321.1 comF operon protein ComFC Machinery gene
  MHI44_RS08535 (MHI44_08535) comFB 1616823..1617119 (-) 297 WP_014478130.1 late competence protein ComFB -
  MHI44_RS08540 (MHI44_08540) comFA 1617179..1618570 (-) 1392 WP_070547860.1 ATP-dependent helicase ComFA Machinery gene
  MHI44_RS08545 (MHI44_08545) - 1618676..1619521 (-) 846 WP_003244125.1 DegV family protein -
  MHI44_RS08550 (MHI44_08550) degU 1619619..1620308 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MHI44_RS08555 (MHI44_08555) degS 1620391..1621548 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27587.85 Da        Isoelectric Point: 9.4913

>NTDB_id=968813 MHI44_RS08530 WP_339203321.1 1616137..1616859(-) (comFC) [Bacillus sp. FSL K6-1366]
MSHEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPRIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=968813 MHI44_RS08530 WP_339203321.1 1616137..1616859(-) (comFC) [Bacillus sp. FSL K6-1366]
ATGTCACACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAGAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCGCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983

Multiple sequence alignment