Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OO773_RS00945 Genome accession   NZ_AP026769
Coordinates   151410..152219 (-) Length   269 a.a.
NCBI ID   WP_006563892.1    Uniprot ID   -
Organism   Helicobacter suis HS1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 146410..157219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO773_RS00920 (HSHS1_01860) - 146892..148172 (+) 1281 WP_264828606.1 ArsS family sensor histidine kinase -
  OO773_RS00925 (HSHS1_01870) - 148169..149350 (+) 1182 WP_050780134.1 amidophosphoribosyltransferase -
  OO773_RS00930 (HSHS1_01880) hemB 149343..150314 (+) 972 WP_040499055.1 porphobilinogen synthase -
  OO773_RS00935 (HSHS1_01890) - 150314..151036 (+) 723 WP_006563894.1 YebC/PmpR family DNA-binding transcriptional regulator -
  OO773_RS00940 (HSHS1_01900) dprB 151018..151413 (-) 396 WP_006563893.1 Holliday junction resolvase RuvX Machinery gene
  OO773_RS00945 (HSHS1_01910) dprA 151410..152219 (-) 810 WP_006563892.1 DNA-processing protein DprA Machinery gene
  OO773_RS00950 (HSHS1_01920) minE 152207..152464 (-) 258 WP_034376430.1 cell division topological specificity factor MinE -
  OO773_RS00955 (HSHS1_01930) minD 152461..153261 (-) 801 WP_006563890.1 septum site-determining protein MinD -
  OO773_RS00960 (HSHS1_01940) ilvC 153270..154250 (-) 981 WP_006563889.1 ketol-acid reductoisomerase -
  OO773_RS00965 (HSHS1_01950) - 154347..156971 (+) 2625 WP_034376427.1 phosphoenolpyruvate carboxylase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29789.60 Da        Isoelectric Point: 9.1603

>NTDB_id=96878 OO773_RS00945 WP_006563892.1 151410..152219(-) (dprA) [Helicobacter suis HS1]
MPVLSHFNYTLLNALPTVLGHLKNPPQNLYYVGRLELFNAPFKIALVGTRKPSVYTQQLTAKLAKGIMQMGGVVVSGGAF
GVDIIAQKNALPHTIMISPCSLDLIYPPSNHATITRIAKEGLLVSEYQENFQPYRFSFLERNRLVVALSDLVIIPEASHN
SGSMASAHLALAQKKPLFVLPQRLYESEGTLSLLAQNKAQAIYDIDAFLDQLAQKFNTKPPKEKAQNAFLKFCQSAPSFE
EAYAQFGDFLLEQELLGVVKRENGRVVLL

Nucleotide


Download         Length: 810 bp        

>NTDB_id=96878 OO773_RS00945 WP_006563892.1 151410..152219(-) (dprA) [Helicobacter suis HS1]
TTGCCCGTATTAAGCCATTTTAACTACACCTTACTTAACGCGCTACCCACAGTCTTAGGGCATCTTAAAAATCCACCGCA
AAATTTATACTATGTGGGTCGCTTAGAGCTTTTCAACGCTCCTTTTAAAATCGCGCTAGTAGGTACGCGTAAACCCAGTG
TCTACACCCAGCAACTCACAGCTAAATTAGCAAAGGGCATTATGCAAATGGGGGGAGTGGTGGTCAGTGGTGGGGCTTTT
GGGGTAGATATTATTGCCCAAAAAAATGCATTACCCCATACAATTATGATCTCTCCATGTAGTTTAGATTTAATTTATCC
TCCAAGTAATCATGCAACCATTACGCGCATTGCTAAAGAAGGCTTACTTGTGAGTGAATACCAAGAGAATTTTCAACCTT
ATCGTTTTTCATTTTTAGAACGAAACCGTTTAGTGGTGGCTTTAAGCGATTTGGTGATTATTCCAGAAGCAAGCCATAAT
AGCGGCTCTATGGCAAGCGCTCATTTAGCTCTAGCCCAAAAAAAGCCTCTCTTTGTGTTACCCCAGCGGCTTTATGAGAG
TGAGGGAACTCTTTCTCTCTTAGCGCAAAATAAAGCCCAAGCGATTTATGATATAGATGCCTTTTTAGATCAATTAGCCC
AAAAATTTAACACAAAGCCCCCTAAAGAAAAAGCACAAAATGCTTTTTTGAAATTCTGCCAGAGTGCGCCTAGTTTTGAG
GAGGCGTACGCTCAGTTTGGGGATTTTCTCTTAGAACAAGAACTTTTAGGGGTGGTTAAACGAGAAAATGGGCGGGTTGT
GTTGCTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(15-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

54.167

98.141

0.532
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

42.918

86.617

0.372

Multiple sequence alignment