Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   OO773_RS00940 Genome accession   NZ_AP026769
Coordinates   151018..151413 (-) Length   131 a.a.
NCBI ID   WP_006563893.1    Uniprot ID   A0A6J4CVV1
Organism   Helicobacter suis HS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 146018..156413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO773_RS00915 (HSHS1_01850) - 146207..146890 (+) 684 WP_006563897.1 response regulator transcription factor -
  OO773_RS00920 (HSHS1_01860) - 146892..148172 (+) 1281 WP_264828606.1 ArsS family sensor histidine kinase -
  OO773_RS00925 (HSHS1_01870) - 148169..149350 (+) 1182 WP_050780134.1 amidophosphoribosyltransferase -
  OO773_RS00930 (HSHS1_01880) hemB 149343..150314 (+) 972 WP_040499055.1 porphobilinogen synthase -
  OO773_RS00935 (HSHS1_01890) - 150314..151036 (+) 723 WP_006563894.1 YebC/PmpR family DNA-binding transcriptional regulator -
  OO773_RS00940 (HSHS1_01900) dprB 151018..151413 (-) 396 WP_006563893.1 Holliday junction resolvase RuvX Machinery gene
  OO773_RS00945 (HSHS1_01910) dprA 151410..152219 (-) 810 WP_006563892.1 DNA-processing protein DprA Machinery gene
  OO773_RS00950 (HSHS1_01920) minE 152207..152464 (-) 258 WP_034376430.1 cell division topological specificity factor MinE -
  OO773_RS00955 (HSHS1_01930) minD 152461..153261 (-) 801 WP_006563890.1 septum site-determining protein MinD -
  OO773_RS00960 (HSHS1_01940) ilvC 153270..154250 (-) 981 WP_006563889.1 ketol-acid reductoisomerase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14821.61 Da        Isoelectric Point: 10.1350

>NTDB_id=96877 OO773_RS00940 WP_006563893.1 151018..151413(-) (dprB) [Helicobacter suis HS1]
MIIACDIGLKRIGLAIYAQKIILPLNSIKRINRKQASLELLHLLETKKATKLIVGLPHACYTTRQRVLHFINLLNFAPVI
YVEEDNSSVEALTNLWHLSSKKRQKASKDGALDSLAACEILRRYLAQEMLV

Nucleotide


Download         Length: 396 bp        

>NTDB_id=96877 OO773_RS00940 WP_006563893.1 151018..151413(-) (dprB) [Helicobacter suis HS1]
ATGATCATCGCTTGTGATATTGGGCTTAAACGAATCGGTCTTGCGATTTATGCACAAAAAATTATTCTGCCCCTTAATTC
CATTAAACGGATTAATCGCAAACAAGCTAGTTTAGAATTACTCCATTTGCTAGAAACTAAAAAGGCCACAAAACTCATCG
TCGGATTGCCCCATGCCTGCTACACCACACGCCAACGCGTTTTACATTTTATTAATCTACTTAACTTTGCGCCTGTGATT
TATGTTGAGGAAGATAATAGCAGTGTAGAGGCGCTTACTAATCTTTGGCATTTATCTAGCAAAAAACGCCAAAAAGCCAG
CAAAGACGGCGCACTAGATAGTTTGGCTGCCTGTGAGATTTTAAGGCGCTATCTAGCTCAAGAAATGTTGGTATAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6J4CVV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

51.587

96.183

0.496

Multiple sequence alignment