Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MHH68_RS16130 Genome accession   NZ_CP150266
Coordinates   3137561..3138250 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL K6-2841     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3132561..3143250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH68_RS16095 (MHH68_16095) - 3132639..3133121 (-) 483 WP_034660146.1 flagellar protein FlgN -
  MHH68_RS16100 (MHH68_16100) flgM 3133140..3133403 (-) 264 WP_339164079.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHH68_RS16105 (MHH68_16105) - 3133483..3133902 (-) 420 WP_034660147.1 TIGR03826 family flagellar region protein -
  MHH68_RS16110 (MHH68_16110) comFC 3133959..3134645 (-) 687 WP_186306801.1 ComF family protein Machinery gene
  MHH68_RS16115 (MHH68_16115) - 3134642..3134935 (-) 294 WP_061409760.1 competence protein ComFB -
  MHH68_RS16120 (MHH68_16120) comFA 3135002..3136381 (-) 1380 WP_339164086.1 DEAD/DEAH box helicase Machinery gene
  MHH68_RS16125 (MHH68_16125) - 3136501..3137343 (-) 843 WP_058013557.1 DegV family protein -
  MHH68_RS16130 (MHH68_16130) degU 3137561..3138250 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MHH68_RS16135 (MHH68_16135) degS 3138315..3139490 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  MHH68_RS16140 (MHH68_16140) - 3139712..3140380 (+) 669 WP_339164090.1 YigZ family protein -
  MHH68_RS16145 (MHH68_16145) - 3140365..3141420 (+) 1056 WP_339164092.1 LCP family protein -
  MHH68_RS16150 (MHH68_16150) - 3141454..3142521 (-) 1068 WP_058013554.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=968752 MHH68_RS16130 WP_008348273.1 3137561..3138250(-) (degU) [Bacillus sp. FSL K6-2841]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=968752 MHH68_RS16130 WP_008348273.1 3137561..3138250(-) (degU) [Bacillus sp. FSL K6-2841]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGTTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGGCGCCTAGCGACTAGCGGCGTTTCAGCACATCCGCAGCATGAAGTATATCCTGAAATTCGG
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment