Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   OO778_RS11455 Genome accession   NZ_AP026765
Coordinates   2411246..2413504 (-) Length   752 a.a.
NCBI ID   WP_264909828.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A16     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2406246..2418504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO778_RS11435 (VspSTUT16_21220) kdsB 2407538..2408293 (-) 756 WP_085343551.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OO778_RS11440 (VspSTUT16_21230) - 2408293..2408472 (-) 180 WP_005390649.1 Trm112 family protein -
  OO778_RS11445 (VspSTUT16_21240) lpxK 2408453..2409460 (-) 1008 WP_065645404.1 tetraacyldisaccharide 4'-kinase -
  OO778_RS11450 (VspSTUT16_21250) msbA 2409466..2411214 (-) 1749 WP_005390646.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  OO778_RS11455 (VspSTUT16_21260) comEC 2411246..2413504 (-) 2259 WP_264909828.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OO778_RS11460 (VspSTUT16_21270) - 2413513..2414022 (+) 510 WP_006742150.1 DUF2062 domain-containing protein -
  OO778_RS11465 (VspSTUT16_21280) lolE 2414172..2415416 (-) 1245 WP_085343474.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  OO778_RS11470 (VspSTUT16_21290) lolD 2415419..2416126 (-) 708 WP_046874713.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  OO778_RS11475 (VspSTUT16_21300) lolC 2416119..2417327 (-) 1209 WP_085343473.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  OO778_RS11480 (VspSTUT16_21310) - 2417577..2418146 (+) 570 WP_006742154.1 hypothetical protein -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84516.45 Da        Isoelectric Point: 8.1736

>NTDB_id=96859 OO778_RS11455 WP_264909828.1 2411246..2413504(-) (comEC) [Vibrio sp. STUT-A16]
MTLSEKSWTLALFVASVISSAWWPTIPDWRWLLLGIITTGSIIKLRRGLISIGAIAGFMVVIVHGNVLESQRQALFQAGE
NITIIGKVDSPFTQISHGYEGIVALKKVNSQTLLPFLKPKIRLITPFPLDVNSEFTTSVSLKPITGLRNEAGFDAEKHAM
GKSIIARGVVNKDVTWIIRSTTSLRQAIIADVSEDVSSLHHFSLINALVFADRSWLSKEDWQALRDSGLLHLVSISGLHI
GMAFTFGLVVGGAIRYALPQYQLLPSFCGLMFAVAYAWLADFSLPTTRAVSVCVIYVVLKYTLVHWASWRVLLLAVALQL
LVQPFASYSMSFWLSYLSVCAVLFAINLIRYQNGGWKAKLKVLLLTQLILSVLIVPISGYYFSGFSLSSIAYNLAFIPWF
GFIVVPLMFLALFSSLFLEMIAKPLWQLVDWSLQPLSTSIQYAIGSWQPISIEMTGLILAGIICLVFQRFMFQYAWCLLL
GIVISIKLTSEYDQQHWRIDVLDVGHGLAVIVEKDDKVLLYDTGKAWQNGSIAEQVVTPVLHQRGYESIDTMILSHSDND
HAGGRLFIEDAFSPQRKLSSQNFIGYESCTRGDHWKWQGLNIEVLWPPALVQRAYNPHSCVLRLTDPISTFSMLFTGDIE
TISEWILLREPEKLKSDVMLVPHHGSKSSSNPRFIEAVNPSVAVASLAKNNQWGMPAEHVVTAYRKLDITWLDTGEYGQV
SFSIHRDNWRSETKRSDTFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=96859 OO778_RS11455 WP_264909828.1 2411246..2413504(-) (comEC) [Vibrio sp. STUT-A16]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGCGTTATTTGTAGCGAGCGTAATTTCGTCAGCTTGGTGGCCGACAATACC
AGATTGGCGTTGGCTGCTGCTGGGAATAATAACCACTGGCTCAATAATCAAATTACGTCGTGGCTTAATTAGCATAGGCG
CAATTGCGGGCTTTATGGTTGTCATCGTCCACGGCAATGTATTGGAGTCTCAGAGACAAGCCCTTTTTCAAGCAGGGGAG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGCATTGTGGCTCTAAAAAA
GGTAAATTCTCAAACTCTGTTACCTTTTCTTAAACCTAAAATCCGTCTTATTACGCCTTTTCCACTCGATGTTAACAGTG
AGTTTACGACATCCGTCTCGTTAAAGCCGATTACAGGCCTACGCAACGAAGCTGGTTTTGACGCCGAAAAGCACGCAATG
GGTAAAAGCATTATCGCACGCGGTGTTGTTAACAAGGATGTTACCTGGATAATTCGCTCTACTACATCTTTGCGCCAAGC
CATTATCGCTGATGTTTCGGAGGATGTGTCCTCCCTTCATCATTTCTCGTTAATAAATGCGTTAGTTTTTGCCGATCGCT
CTTGGTTATCTAAGGAAGATTGGCAAGCACTCAGAGACAGTGGTTTACTGCACTTGGTCTCGATTTCGGGCTTACATATT
GGTATGGCGTTCACTTTTGGGCTAGTGGTGGGCGGTGCCATTCGTTATGCGTTACCTCAATACCAGCTATTGCCTAGCTT
CTGTGGGCTGATGTTTGCCGTTGCCTATGCTTGGTTAGCGGACTTCTCATTACCTACTACCCGCGCGGTGTCGGTATGTG
TTATTTACGTCGTTCTCAAATATACCTTAGTGCACTGGGCTTCCTGGCGGGTACTTTTGCTCGCGGTAGCGCTACAACTG
CTTGTTCAACCTTTTGCATCGTATAGCATGAGTTTTTGGTTATCGTATTTGTCAGTTTGCGCAGTGTTGTTCGCAATCAA
TTTGATTCGGTATCAAAACGGGGGCTGGAAGGCGAAGTTAAAAGTGCTATTGCTTACTCAATTGATTCTGAGTGTGTTAA
TCGTGCCTATTAGTGGCTATTACTTTTCTGGTTTCAGTTTGTCATCAATTGCATACAACTTGGCGTTTATTCCTTGGTTC
GGATTTATCGTTGTGCCTTTGATGTTTCTGGCCCTGTTCTCATCTTTATTTCTTGAAATGATAGCAAAGCCTCTGTGGCA
GTTGGTGGACTGGTCATTGCAGCCATTGAGCACGTCAATTCAGTACGCGATAGGCTCCTGGCAACCCATTAGTATAGAAA
TGACAGGGTTGATTCTGGCGGGAATTATTTGCTTGGTGTTTCAACGATTCATGTTTCAGTACGCGTGGTGTTTGTTACTT
GGCATTGTAATTAGTATTAAGCTCACATCGGAATATGATCAGCAACATTGGCGAATTGATGTACTAGATGTGGGCCATGG
CCTTGCGGTGATTGTAGAAAAAGACGATAAAGTGTTGCTCTATGATACAGGTAAAGCATGGCAAAATGGCAGTATTGCGG
AGCAGGTCGTCACTCCGGTCTTGCATCAACGAGGTTATGAAAGCATCGATACGATGATCCTCAGCCATTCCGACAATGAC
CATGCAGGAGGGCGCTTGTTCATTGAAGATGCCTTTTCGCCACAGCGCAAACTCAGTAGCCAAAACTTTATCGGATATGA
GTCTTGTACTCGCGGCGATCATTGGAAATGGCAAGGGTTAAATATAGAAGTACTTTGGCCTCCTGCTCTTGTTCAACGTG
CATATAATCCGCACTCCTGTGTGCTACGTCTTACCGACCCTATTTCTACGTTCAGTATGCTTTTTACTGGTGATATTGAG
ACCATTAGCGAGTGGATCTTGCTCAGGGAGCCTGAAAAGTTAAAAAGTGATGTGATGTTGGTCCCTCATCATGGTAGTAA
AAGTTCTTCGAATCCTCGCTTTATTGAAGCGGTAAACCCGAGTGTGGCCGTTGCTTCTTTGGCAAAAAATAATCAATGGG
GAATGCCGGCAGAACATGTTGTTACAGCATATCGCAAGCTTGATATTACTTGGCTTGATACTGGGGAATATGGTCAGGTA
AGCTTCTCTATTCACCGTGATAATTGGCGCTCAGAAACCAAACGTAGCGATACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-686)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

70.878

100

0.709
  comEC Vibrio campbellii strain DS40M4

65.957

100

0.66
  comEC Vibrio cholerae strain A1552

41.987

100

0.422

Multiple sequence alignment