Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   MHH62_RS00920 Genome accession   NZ_CP150262
Coordinates   206253..208478 (+) Length   741 a.a.
NCBI ID   WP_339232237.1    Uniprot ID   -
Organism   Pseudomonas sp. FSL L8-0168     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 201253..213478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH62_RS00905 (MHH62_00905) - 203525..204253 (+) 729 WP_014718880.1 response regulator transcription factor -
  MHH62_RS00910 (MHH62_00910) - 204240..205598 (+) 1359 WP_103451700.1 sensor histidine kinase -
  MHH62_RS00915 (MHH62_00915) - 205602..206117 (-) 516 WP_003192045.1 DUF2062 domain-containing protein -
  MHH62_RS00920 (MHH62_00920) comA 206253..208478 (+) 2226 WP_339232237.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MHH62_RS00925 (MHH62_00925) exbB 208587..209222 (+) 636 WP_003192043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MHH62_RS00930 (MHH62_00930) - 209219..209647 (+) 429 WP_014718877.1 biopolymer transporter ExbD -
  MHH62_RS00935 (MHH62_00935) lpxK 209647..210657 (+) 1011 WP_032902859.1 tetraacyldisaccharide 4'-kinase -
  MHH62_RS00940 (MHH62_00940) - 210682..210867 (+) 186 WP_003174668.1 Trm112 family protein -
  MHH62_RS00945 (MHH62_00945) kdsB 210864..211628 (+) 765 WP_103452076.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MHH62_RS00950 (MHH62_00950) - 211628..212092 (+) 465 WP_014718874.1 low molecular weight protein-tyrosine-phosphatase -
  MHH62_RS00955 (MHH62_00955) murB 212089..213108 (+) 1020 WP_198833278.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80322.49 Da        Isoelectric Point: 10.5464

>NTDB_id=968568 MHH62_RS00920 WP_339232237.1 206253..208478(+) (comA) [Pseudomonas sp. FSL L8-0168]
MKTGMLALALGLLMLRWLPALPPGGALLGMLVLALMLLPFRSYPLAFFLVGLSWACFSAQRALDDRLQPALDGQTRWVEG
RVVGLPQQTVTGVRFELADGRLRKGRLPKRIRVSWHGGPVVNSGERWRLALTLKRPAGLLNFHGVDHEAWLLAQRIGATA
TVKDGERLAPARNAWRDAVRQRVMAVDAQGREAGLAALVLGDGSGLAPEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGF
VAVLARYGCWPQTWPWLPWACGLAFGAALGYGLLAGFGVPVQRACMMVGLVLLWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQVGFWLSFAAVAVLLLAFGGRLGPWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPVANLFAVPWISLVVLPLAL
LGTALLWVPLAGEAVLWLAGGALDGLFKGLALLAGQLPAWVPPEVPLAYWLVSLMGAVVLLLPKGVPFRVLGWPMLLMAV
FPPRQWVPHGQVDVLQLDVGQGQALILRTRHHTLLYDAGPRSGPVDLGARVVLPSLKKLGVGQLDMMLLSHADADHAGGA
AAVARGLPVKRVVGGEIEGLPAFLATQPCTSGERWEWDGVSFELWQWAGGLEGNPRSCVLHVQANGERLLLTGDIDRAAE
QAFLASPLAVPTDWLQAPHHGSRSSSSWPFVQRLAPTSVLISRGRSNTFGHPHPQVLDRYQALGSRVYDSAEQGAVRLRL
GAFVPATVARSERRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=968568 MHH62_RS00920 WP_339232237.1 206253..208478(+) (comA) [Pseudomonas sp. FSL L8-0168]
ATGAAGACAGGGATGTTGGCGTTGGCGCTGGGGTTGCTGATGTTGCGTTGGTTGCCGGCCCTGCCGCCCGGCGGCGCGTT
ATTGGGCATGCTGGTGTTGGCCTTGATGCTGTTGCCTTTTCGGTCCTATCCCTTGGCCTTTTTTCTGGTGGGGTTGAGCT
GGGCTTGCTTTAGCGCGCAGCGGGCGTTGGATGATCGACTGCAGCCGGCCCTGGATGGGCAGACTCGTTGGGTGGAGGGG
CGTGTGGTCGGCTTGCCCCAGCAGACGGTTACGGGCGTGCGCTTTGAACTGGCCGACGGCCGGTTGCGCAAGGGGCGGCT
GCCCAAACGTATCCGCGTGTCCTGGCACGGCGGGCCAGTGGTGAACAGCGGCGAACGCTGGCGCCTGGCGCTGACACTCA
AGCGGCCTGCGGGCCTGCTCAATTTTCATGGAGTTGACCACGAAGCCTGGCTGCTGGCCCAGCGTATCGGTGCCACTGCA
ACGGTAAAAGATGGTGAACGCCTCGCACCGGCCCGCAATGCCTGGCGCGATGCTGTTCGCCAGCGCGTGATGGCGGTGGA
TGCCCAAGGCCGCGAGGCGGGCTTGGCGGCGTTGGTATTGGGCGACGGTTCCGGCTTGGCGCCTGAGGATTGGCAGGTGT
TGCAGGACACGGGCACGGTGCATCTGCTGGTGATTTCCGGGCAGCATATCGGCTTGTTGGCGGGCTTGATCTACGGCTTT
GTCGCGGTATTGGCGCGCTATGGTTGCTGGCCACAAACCTGGCCGTGGCTGCCGTGGGCGTGCGGCCTGGCTTTTGGCGC
AGCGTTGGGTTATGGCCTGCTGGCGGGGTTTGGCGTGCCGGTGCAGCGGGCTTGTATGATGGTCGGCCTGGTGTTGCTGT
GGCGTCTGCGTTTCCGCCATTTGGGGCTGTGGTGGCCGTTGCTGCTGGCGCTGAACGGCGTGCTGGTGCTGGAGCCCTTG
GCCAGCCTGCAGGTAGGGTTCTGGTTATCGTTTGCGGCGGTCGCGGTATTGTTGCTGGCGTTCGGCGGGCGCTTGGGGCC
GTGGAGCGTCTGGCAGGCGTGGACCCGGCCTCAGTGGTTGATTGCCATTGGCTTGTTTCCGGTGTTGCTGGTGTTGGGTT
TGCCCATCAGCCTCAGCGCACCGGTGGCCAATCTGTTTGCCGTGCCGTGGATCAGCCTGGTGGTGCTGCCCCTGGCGCTG
CTGGGCACGGCGTTGTTGTGGGTGCCGCTGGCGGGGGAAGCTGTGCTGTGGCTGGCCGGCGGCGCGCTGGACGGATTGTT
CAAGGGCCTGGCGCTGCTTGCCGGGCAATTGCCGGCCTGGGTGCCGCCCGAGGTGCCGCTGGCGTATTGGCTGGTCAGCC
TGATGGGCGCAGTGGTGTTACTGCTGCCCAAAGGGGTGCCGTTCCGGGTGTTGGGCTGGCCCATGTTGTTGATGGCCGTT
TTCCCGCCCCGGCAGTGGGTGCCCCACGGACAGGTCGATGTGTTGCAACTGGATGTCGGCCAGGGGCAGGCACTGATCCT
GCGCACCCGCCATCACACCTTGCTCTACGATGCCGGGCCGCGCTCGGGGCCTGTCGACCTCGGCGCGCGCGTCGTGTTGC
CGTCGTTGAAAAAACTCGGGGTAGGGCAGTTGGACATGATGCTGCTCAGCCATGCCGACGCCGATCACGCCGGTGGTGCG
GCAGCAGTGGCTCGGGGGCTGCCCGTCAAACGCGTGGTGGGCGGCGAAATCGAGGGCTTGCCAGCCTTTCTCGCCACCCA
GCCCTGTACCAGCGGCGAACGATGGGAATGGGATGGTGTGTCGTTTGAACTGTGGCAGTGGGCGGGTGGGCTTGAGGGCA
ATCCGAGGTCGTGCGTGCTGCACGTCCAGGCCAATGGCGAACGCCTGCTGCTCACCGGCGACATTGATCGCGCTGCCGAA
CAGGCGTTTCTGGCATCCCCGCTGGCGGTTCCGACCGACTGGCTGCAGGCCCCGCACCATGGCAGCCGAAGTTCTTCGTC
CTGGCCTTTCGTACAACGGTTGGCGCCCACCTCTGTGCTGATTTCCCGCGGTCGCAGCAATACGTTTGGCCATCCTCATC
CGCAGGTCCTCGACCGCTACCAAGCACTGGGCAGCCGGGTGTATGACAGCGCCGAACAGGGCGCTGTGCGCCTGCGCCTG
GGGGCGTTTGTGCCTGCGACGGTTGCGCGCAGCGAACGTCGTTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.388

97.031

0.576
  comA Ralstonia pseudosolanacearum GMI1000

33.883

100

0.36

Multiple sequence alignment