Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   MHH62_RS00925 Genome accession   NZ_CP150262
Coordinates   208587..209222 (+) Length   211 a.a.
NCBI ID   WP_003192043.1    Uniprot ID   A0A0W0N0T4
Organism   Pseudomonas sp. FSL L8-0168     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 203587..214222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH62_RS00910 (MHH62_00910) - 204240..205598 (+) 1359 WP_103451700.1 sensor histidine kinase -
  MHH62_RS00915 (MHH62_00915) - 205602..206117 (-) 516 WP_003192045.1 DUF2062 domain-containing protein -
  MHH62_RS00920 (MHH62_00920) comA 206253..208478 (+) 2226 WP_339232237.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MHH62_RS00925 (MHH62_00925) exbB 208587..209222 (+) 636 WP_003192043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MHH62_RS00930 (MHH62_00930) - 209219..209647 (+) 429 WP_014718877.1 biopolymer transporter ExbD -
  MHH62_RS00935 (MHH62_00935) lpxK 209647..210657 (+) 1011 WP_032902859.1 tetraacyldisaccharide 4'-kinase -
  MHH62_RS00940 (MHH62_00940) - 210682..210867 (+) 186 WP_003174668.1 Trm112 family protein -
  MHH62_RS00945 (MHH62_00945) kdsB 210864..211628 (+) 765 WP_103452076.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MHH62_RS00950 (MHH62_00950) - 211628..212092 (+) 465 WP_014718874.1 low molecular weight protein-tyrosine-phosphatase -
  MHH62_RS00955 (MHH62_00955) murB 212089..213108 (+) 1020 WP_198833278.1 UDP-N-acetylmuramate dehydrogenase -
  MHH62_RS00960 (MHH62_00960) - 213178..213849 (-) 672 WP_003192030.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22910.04 Da        Isoelectric Point: 7.3615

>NTDB_id=968569 MHH62_RS00925 WP_003192043.1 208587..209222(+) (exbB) [Pseudomonas sp. FSL L8-0168]
MWELVKSGGWMMLPIILSSIVALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=968569 MHH62_RS00925 WP_003192043.1 208587..209222(+) (exbB) [Pseudomonas sp. FSL L8-0168]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGTCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACTTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAAAAGCTCAAAGAGCTGCGTGCCAATTCGCCACTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCGGCCGCCCGGGTTATTCATGAACTGGAGCGCTACAT
CAACGCCCTCGGCACTATCGCCGCCATGGCGCCGTTGCTCGGTTTGCTCGGCACGGTCCTGGGCATGATCGATATCTTCA
GCGCGTTCACGGGCTCGGGCATGACCACCAACGCGTCGGTATTGGCCGGGGGCATTTCCAAGGCCCTGATCACCACTGCT
GCGGGCTTGATGGTGGGTATCCCTTCGGTGTTTTTCCACCGTTTCCTGCAGCGGCGCATTGATGAGCTGGTGGTCGGTAT
GGAACAGGAAGCCATCAAGCTGGTAGAAGTGGTGCAGGGCGACCGTGATGTAGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N0T4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment