Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   OO774_RS10780 Genome accession   NZ_AP026763
Coordinates   2300800..2303067 (-) Length   755 a.a.
NCBI ID   WP_264902366.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2295800..2308067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO774_RS10760 (VspSTUT11_20340) kdsB 2297100..2297858 (-) 759 WP_264902332.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OO774_RS10765 (VspSTUT11_20350) - 2297858..2298037 (-) 180 WP_005378451.1 Trm112 family protein -
  OO774_RS10770 (VspSTUT11_20360) lpxK 2298018..2299025 (-) 1008 WP_264902363.1 tetraacyldisaccharide 4'-kinase -
  OO774_RS10775 (VspSTUT11_20370) msbA 2299029..2300777 (-) 1749 WP_264902365.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  OO774_RS10780 (VspSTUT11_20380) comEC 2300800..2303067 (-) 2268 WP_264902366.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OO774_RS10785 (VspSTUT11_20390) - 2303076..2303585 (+) 510 WP_264902367.1 DUF2062 domain-containing protein -
  OO774_RS10790 (VspSTUT11_20400) lolE 2303761..2305005 (-) 1245 WP_264902369.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  OO774_RS10795 (VspSTUT11_20410) lolD 2305008..2305715 (-) 708 WP_264902371.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  OO774_RS10800 (VspSTUT11_20420) lolC 2305708..2306916 (-) 1209 WP_264902373.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  OO774_RS10805 (VspSTUT11_20430) - 2307169..2307738 (+) 570 WP_264902375.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 755 a.a.        Molecular weight: 85019.15 Da        Isoelectric Point: 7.5617

>NTDB_id=96817 OO774_RS10780 WP_264902366.1 2300800..2303067(-) (comEC) [Vibrio sp. STUT-A11]
MTLSEKSWTLVLFVASVISSAWWPTMPDWRWLLLGIITTGSIIKLRRGLISIGVIWGLMVVIIHGNVLEYQRQALFNVGE
NSTIIGKVDSSFNQISHGYEGIVTIKQVNDQRLLPFLKPKVRFITYFAIPVNSEFTTTALVKPIIGLRNEAGFDAEKQAM
GKGILARAIVSGDAHWIIRTSSSVRQKIVSRVTEDISELDHFPLISALVFADRNWLSDDDWQGLRDSGLLHLVSISGLHI
GMAFSFGLLLGGSVRFALPRYQAMPSIMGLAVALCYAWLADFSLPTTRAASVCVIYVVLKISLVHWSTWRVLLLAVAFQL
FIQPFASFSMSFWLSYLSVGAVLLVINLVRLNSSTWLGKLRTLFITQIALSLFVLPISGYFFSGVSLLAIAYNFIFIPWF
GFVVVPLIFIALSVSLLVPALSEFVWQWMDLSLWPLSESLQFALGSWQPLSIDLMWMFSLLCACLVLKRFLLWQGWLLLV
VITIIVTGLTGRKSASWRIDVLDVGHGLAVMIEKDGRVLLYDTGKSWPGGSMAEQVIVPILHSRGFELVDSIILSHWDND
HAGGRSVIETEFSPTNMRSSQHFDGYQPCVNGDNWEWQQLDIEVLWPPKIVTRAYNPHSCVFRLRDPDSDFSMLFTGDIE
SISEWILLRDPEKLRSDVMLVPHHGSKTSSNPRFINAVDPILAIASLAKNNQWGMPAETVVTSYRNAGALWLDTGDSGQI
TIRVKKDKWDFEKKRSDTFEPWYRQMVRKGVEYES

Nucleotide


Download         Length: 2268 bp        

>NTDB_id=96817 OO774_RS10780 WP_264902366.1 2300800..2303067(-) (comEC) [Vibrio sp. STUT-A11]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGTGTTATTTGTAGCAAGCGTTATATCGTCGGCATGGTGGCCGACAATGCC
AGATTGGCGCTGGTTACTGCTGGGAATAATTACCACTGGTTCAATAATTAAATTACGTCGTGGCTTAATCAGCATAGGCG
TAATTTGGGGCTTAATGGTAGTCATCATCCACGGCAATGTTTTGGAGTATCAGCGACAAGCCCTTTTTAATGTAGGGGAG
AATAGTACCATAATTGGCAAAGTTGACAGCTCTTTTAATCAAATAAGTCATGGATATGAAGGTATCGTGACGATAAAACA
AGTTAATGATCAACGTCTGCTACCTTTTCTTAAACCTAAAGTCCGTTTTATCACCTACTTTGCTATACCCGTTAACAGTG
AGTTTACGACGACGGCGCTGGTAAAACCCATTATTGGACTACGTAATGAAGCGGGATTCGACGCTGAAAAGCAGGCAATG
GGAAAAGGTATTTTAGCCAGAGCCATTGTGTCTGGTGATGCCCATTGGATCATTCGAACCAGCAGCTCTGTGCGTCAGAA
GATAGTTAGTCGGGTAACGGAGGATATATCCGAGCTGGACCACTTTCCATTGATTAGCGCATTGGTTTTTGCTGATCGCA
ACTGGCTTTCTGACGATGATTGGCAAGGGCTGAGAGACAGTGGGTTATTGCATCTTGTCTCTATTTCTGGGTTGCATATC
GGAATGGCTTTTAGTTTTGGGTTATTGCTCGGTGGAAGTGTTCGTTTCGCTTTGCCACGTTATCAAGCAATGCCTTCCAT
TATGGGGTTAGCTGTTGCTTTATGTTATGCCTGGCTTGCCGATTTCTCTCTACCAACTACTCGCGCTGCTTCAGTTTGTG
TGATTTATGTCGTTTTAAAAATTTCTCTGGTTCACTGGAGTACCTGGAGAGTGCTATTACTCGCAGTTGCTTTTCAGCTG
TTTATCCAACCTTTTGCTTCTTTTAGTATGAGTTTCTGGCTCTCGTACCTCTCTGTTGGCGCGGTGCTCTTAGTCATCAA
CCTTGTGCGGCTCAATAGCAGCACTTGGCTGGGAAAACTGCGAACCTTGTTTATTACTCAGATCGCCTTGAGCTTGTTCG
TGCTCCCTATAAGTGGCTATTTCTTCTCGGGCGTAAGCCTATTAGCAATCGCGTATAACTTTATCTTTATTCCATGGTTT
GGGTTTGTTGTTGTTCCTCTGATATTCATCGCGCTATCAGTTTCTTTATTGGTACCCGCATTATCGGAGTTTGTCTGGCA
ATGGATGGATCTTTCTTTGTGGCCATTAAGTGAATCTCTTCAGTTTGCCCTTGGTTCGTGGCAGCCACTGTCGATAGATC
TCATGTGGATGTTTTCTCTTTTGTGTGCGTGCTTGGTTCTGAAGCGGTTTTTGTTATGGCAGGGCTGGCTGCTACTTGTT
GTCATTACCATCATTGTCACCGGATTGACTGGGCGAAAAAGTGCAAGTTGGCGCATTGACGTGCTCGATGTCGGTCATGG
TTTAGCTGTGATGATTGAAAAAGATGGAAGAGTTCTGCTCTACGACACAGGTAAATCTTGGCCGGGTGGTAGCATGGCGG
AGCAGGTGATTGTTCCAATACTTCATAGCAGGGGATTCGAGTTGGTGGATAGCATTATTCTCAGCCATTGGGACAATGAC
CATGCGGGAGGCCGAAGTGTGATTGAGACGGAGTTCTCTCCAACTAATATGCGCAGCAGTCAACATTTTGATGGTTATCA
ACCCTGTGTGAATGGTGATAACTGGGAGTGGCAACAACTCGATATCGAGGTGCTTTGGCCACCTAAAATTGTCACACGAG
CGTACAACCCTCACTCGTGTGTTTTTAGACTCAGAGACCCGGACTCTGATTTTTCTATGCTTTTTACAGGCGATATTGAG
TCTATCAGTGAGTGGATACTTCTCCGGGATCCTGAAAAGCTGCGCAGTGATGTGATGCTCGTACCACACCACGGCAGTAA
AACTTCCTCGAACCCGCGCTTTATTAATGCTGTCGACCCGATCTTAGCGATAGCGTCACTGGCGAAAAATAATCAGTGGG
GAATGCCTGCGGAGACGGTAGTGACATCTTACCGCAATGCGGGTGCTTTATGGCTTGATACCGGGGATAGCGGGCAAATA
ACGATTCGGGTGAAGAAAGATAAGTGGGATTTTGAAAAGAAACGTAGTGATACATTTGAACCATGGTATAGGCAGATGGT
GCGTAAGGGGGTAGAATACGAGTCTTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-675)

Competence protein (Competence)

(208-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

67.287

99.603

0.67
  comEC Vibrio campbellii strain DS40M4

64.894

99.603

0.646
  comEC Vibrio cholerae strain A1552

40.184

100

0.404

Multiple sequence alignment