Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MKZ05_RS18785 Genome accession   NZ_CP150255
Coordinates   3712261..3712806 (-) Length   181 a.a.
NCBI ID   WP_003215157.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0277     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3707261..3717806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKZ05_RS18760 (MKZ05_18760) - 3707526..3708134 (-) 609 WP_339160870.1 alpha/beta hydrolase -
  MKZ05_RS18765 (MKZ05_18765) - 3708131..3709102 (-) 972 WP_339160872.1 ring-cleaving dioxygenase -
  MKZ05_RS18770 (MKZ05_18770) - 3709294..3710811 (-) 1518 WP_339160875.1 ABC transporter permease/substrate-binding protein -
  MKZ05_RS18775 (MKZ05_18775) - 3710804..3711769 (-) 966 WP_339160878.1 ABC transporter ATP-binding protein -
  MKZ05_RS18780 (MKZ05_18780) rpsR 3711981..3712220 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  MKZ05_RS18785 (MKZ05_18785) ssbA 3712261..3712806 (-) 546 WP_003215157.1 single-stranded DNA-binding protein SsbA Machinery gene
  MKZ05_RS18790 (MKZ05_18790) rpsF 3712843..3713130 (-) 288 WP_003215073.1 30S ribosomal protein S6 -
  MKZ05_RS18795 (MKZ05_18795) ychF 3713239..3714339 (-) 1101 WP_268459986.1 redox-regulated ATPase YchF -
  MKZ05_RS18800 (MKZ05_18800) - 3714556..3714762 (-) 207 WP_012011910.1 DUF951 domain-containing protein -
  MKZ05_RS18805 (MKZ05_18805) - 3715057..3716376 (+) 1320 WP_339160885.1 hydrolase -
  MKZ05_RS18810 (MKZ05_18810) - 3716392..3716796 (+) 405 WP_339160887.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19706.26 Da        Isoelectric Point: 4.6109

>NTDB_id=968109 MKZ05_RS18785 WP_003215157.1 3712261..3712806(-) (ssbA) [Bacillus sp. FSL M8-0277]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQSNQQNRNQGNSF
NDDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=968109 MKZ05_RS18785 WP_003215157.1 3712261..3712806(-) (ssbA) [Bacillus sp. FSL M8-0277]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAGCAACCAACAAAATCGTAATCAGGGAAATAGCTTC
AATGATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.53

100

0.845
  ssb Latilactobacillus sakei subsp. sakei 23K

55.08

100

0.569
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376

Multiple sequence alignment