Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OO774_RS05050 Genome accession   NZ_AP026763
Coordinates   1060652..1062013 (+) Length   453 a.a.
NCBI ID   WP_264906069.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A11     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1055652..1067013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO774_RS05040 (VspSTUT11_09160) - 1057076..1057654 (+) 579 WP_264905237.1 hypothetical protein -
  OO774_RS05045 (VspSTUT11_09180) uvrB 1058292..1060322 (+) 2031 WP_264905239.1 excinuclease ABC subunit UvrB -
  OO774_RS05050 (VspSTUT11_09190) luxO 1060652..1062013 (+) 1362 WP_264906069.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OO774_RS05055 (VspSTUT11_09200) luxU 1062010..1062354 (+) 345 WP_264906070.1 quorum-sensing phosphorelay protein LuxU -
  OO774_RS05060 (VspSTUT11_09210) - 1062421..1063317 (-) 897 WP_264905241.1 YvcK family protein -
  OO774_RS05065 (VspSTUT11_09220) moaA 1063624..1064613 (+) 990 WP_264905242.1 GTP 3',8-cyclase MoaA -
  OO774_RS05070 (VspSTUT11_09230) moaB 1064715..1065227 (+) 513 WP_014232531.1 molybdenum cofactor biosynthesis protein B -
  OO774_RS05075 (VspSTUT11_09240) moaC 1065255..1065734 (+) 480 WP_264905244.1 cyclic pyranopterin monophosphate synthase MoaC -
  OO774_RS05080 (VspSTUT11_09250) moaD 1065731..1065988 (+) 258 WP_264905246.1 molybdopterin synthase sulfur carrier subunit -
  OO774_RS05085 (VspSTUT11_09260) moaE 1065990..1066445 (+) 456 WP_264905247.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50376.58 Da        Isoelectric Point: 6.3521

>NTDB_id=96810 OO774_RS05050 WP_264906069.1 1060652..1062013(+) (luxO) [Vibrio sp. STUT-A11]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLKHRIPDLILLDLRLPDMTGMDVLHAVKKSHPDVPIIFMTAHGSI
DTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVVEIAYSLLG
YMSHEEGKSFVRFSQQVIDRFNNYEWPGNVRQLQNVLRNIVVLNHGKEITLDMLPPPLNQPLARKASTSLIDPKEMTASD
IVPLWITEKMAIESAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNSKEERQKV

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=96810 OO774_RS05050 WP_264906069.1 1060652..1062013(+) (luxO) [Vibrio sp. STUT-A11]
ATGGTCGAAGATACGGCATCCGTTGCGGCGTTGTATCGTTCATACCTCACGCCATTAGGCATTGATATTAACATTGTTGG
TACGGGACGTGATGCGATCGAAAGTCTTAAACATCGTATTCCTGACCTTATCCTGCTTGATCTTCGTCTGCCTGACATGA
CTGGTATGGACGTTCTGCATGCTGTTAAAAAAAGTCATCCAGACGTTCCTATCATCTTTATGACCGCACACGGCTCTATC
GATACTGCGGTAGAAGCAATGCGCCACGGTTCCCAGGATTTTTTGATTAAGCCGTGTGAAGCGGACCGACTACGTGTCAC
GGTGAACAATGCGATACGAAAAGCGACCAAGTTAAAAAATGAAGCCGATAATCCGGGAAACCAGAATTATCAGGGGTTCA
TCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGTACGATTGACTCAGCCGCGAGTAGCAAGGCGAGTATTTTCATCACA
GGTGAAAGTGGTACGGGTAAAGAGGTGTGCGCCGAAGCTATCCATGCGGCGAGTAAACGAGGGGACAAGCCTTTTATCGC
CATTAACTGTGCGGCGATCCCAAAAGACCTGATTGAAAGTGAGCTGTTTGGACATGTAAAAGGCGCGTTTACGGGAGCGG
CGAACGATCGTCAGGGGGCTGCGGAGTTAGCCGATGGTGGTACGCTGTTTCTTGATGAGCTGTGTGAAATGGATTTGGAC
TTGCAGACCAAGTTACTGCGATTTATTCAGACGGGTACCTTCCAGAAAGTAGGCTCATCAAAAATGAAGAGTGTGGATGT
GCGCTTTGTGTGTGCGACCAACCGTGATCCGTGGAAAGAGGTTCAGGAAGGTCGCTTCCGTGAAGACTTGTACTACCGTC
TATATGTTATACCATTACATTTGCCACCTTTGCGTGAGCGTGGTGAAGACGTTGTGGAAATTGCTTACTCGCTGTTGGGC
TATATGTCTCATGAAGAGGGGAAAAGTTTTGTGCGCTTTTCCCAACAGGTGATTGATCGATTCAATAATTATGAGTGGCC
TGGCAACGTACGTCAGTTGCAAAATGTTCTGCGTAATATTGTGGTGTTGAATCACGGCAAGGAAATTACTTTGGATATGC
TTCCACCACCATTGAATCAGCCATTGGCGCGTAAAGCTTCCACTTCTTTGATTGATCCTAAAGAGATGACTGCGTCGGAT
ATTGTGCCACTGTGGATAACGGAAAAAATGGCTATTGAAAGCGCAATTGAAGCATGCGACGGAAATATTCCCCGAGCGGC
AGGGTATCTTGATGTCAGTCCATCGACGATTTACCGTAAGTTACAAGCGTGGAACAGCAAGGAAGAGCGGCAGAAAGTAT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(2-108)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.161

98.896

0.852
  pilR Pseudomonas aeruginosa PAK

38.926

98.675

0.384

Multiple sequence alignment