Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OO774_RS01345 Genome accession   NZ_AP026763
Coordinates   282189..282821 (-) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio sp. STUT-A11     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 277189..287821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO774_RS01330 (VspSTUT11_02130) astA 278388..279407 (+) 1020 WP_264904071.1 arginine N-succinyltransferase -
  OO774_RS01335 (VspSTUT11_02140) astD 279436..280893 (+) 1458 WP_264904072.1 succinylglutamate-semialdehyde dehydrogenase -
  OO774_RS01340 (VspSTUT11_02150) - 281280..282071 (+) 792 WP_264904074.1 DUF1338 domain-containing protein -
  OO774_RS01345 (VspSTUT11_02160) crp 282189..282821 (-) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  OO774_RS01350 (VspSTUT11_02170) - 283062..283931 (-) 870 WP_014233188.1 phosphoribulokinase -
  OO774_RS01355 (VspSTUT11_02180) - 284068..284280 (-) 213 WP_176292282.1 YheU family protein -
  OO774_RS01360 (VspSTUT11_02190) - 284367..285374 (-) 1008 WP_264904082.1 hydrolase -
  OO774_RS01365 (VspSTUT11_02200) - 285543..286031 (-) 489 WP_264904084.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=96789 OO774_RS01345 WP_005381432.1 282189..282821(-) (crp) [Vibrio sp. STUT-A11]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=96789 OO774_RS01345 WP_005381432.1 282189..282821(-) (crp) [Vibrio sp. STUT-A11]
ATGGTTCTAGGTAAACCTCAAACCGACCCGACATTAGAGTGGTTTCTTTCACACTGTCACATTCATAAGTACCCTTCAAA
GAGCACGCTGATTCACGCTGGTGAAAAAGCTGAAACCTTATACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGTGACTTTATTGGTGAACTTGGTCTATTCGAGGAAGAC
CAAGAGCGTACAGCTTGGGTTCGAGCTAAATCTCCTTGTGAAGTTGCTGAGATTTCTTTCAAGAAATTCCGTCAGCTTAT
CCAAGTAAACCCAGACATCCTAATGCGTCTTTCTGCGCAGATGGCTCGTCGCCTTCAAGTAACCAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTTCTGAACCTTGCAAAACAACCAGACGCGATGACTCAC
CCAGATGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATTGTTGGCTGTTCTCGTGAGACAGTTGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAATCTAATCTCTGCGCACGGTAAAACTATCGTCGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment