Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NYE53_RS17840 Genome accession   NZ_CP150251
Coordinates   3477130..3477819 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. FSL R5-0523     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3472130..3482819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE53_RS17805 (NYE53_17805) flgN 3472311..3472793 (-) 483 WP_251188233.1 flagellar protein FlgN -
  NYE53_RS17810 (NYE53_17810) flgM 3472809..3473075 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE53_RS17815 (NYE53_17815) - 3473156..3473575 (-) 420 WP_339245999.1 TIGR03826 family flagellar region protein -
  NYE53_RS17820 (NYE53_17820) comFC 3473648..3474370 (-) 723 WP_339246000.1 comF operon protein ComFC Machinery gene
  NYE53_RS17825 (NYE53_17825) comFB 3474355..3474630 (-) 276 WP_339246003.1 late competence protein ComFB -
  NYE53_RS17830 (NYE53_17830) comFA 3474690..3476081 (-) 1392 WP_339246005.1 ATP-dependent helicase ComFA Machinery gene
  NYE53_RS17835 (NYE53_17835) - 3476187..3477032 (-) 846 WP_003227986.1 DegV family protein -
  NYE53_RS17840 (NYE53_17840) degU 3477130..3477819 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE53_RS17845 (NYE53_17845) degS 3477902..3479059 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NYE53_RS17850 (NYE53_17850) - 3479276..3479929 (+) 654 WP_003227979.1 YigZ family protein -
  NYE53_RS17855 (NYE53_17855) tagV 3479929..3481104 (+) 1176 WP_327828494.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  NYE53_RS17860 (NYE53_17860) - 3481177..3482253 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=967830 NYE53_RS17840 WP_003219701.1 3477130..3477819(-) (degU) [Bacillus sp. FSL R5-0523]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=967830 NYE53_RS17840 WP_003219701.1 3477130..3477819(-) (degU) [Bacillus sp. FSL R5-0523]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCGGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment