Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NYE53_RS17830 Genome accession   NZ_CP150251
Coordinates   3474690..3476081 (-) Length   463 a.a.
NCBI ID   WP_339246005.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0523     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3469690..3481081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE53_RS17795 (NYE53_17795) flgL 3469862..3470758 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  NYE53_RS17800 (NYE53_17800) flgK 3470769..3472292 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  NYE53_RS17805 (NYE53_17805) flgN 3472311..3472793 (-) 483 WP_251188233.1 flagellar protein FlgN -
  NYE53_RS17810 (NYE53_17810) flgM 3472809..3473075 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE53_RS17815 (NYE53_17815) - 3473156..3473575 (-) 420 WP_339245999.1 TIGR03826 family flagellar region protein -
  NYE53_RS17820 (NYE53_17820) comFC 3473648..3474370 (-) 723 WP_339246000.1 comF operon protein ComFC Machinery gene
  NYE53_RS17825 (NYE53_17825) comFB 3474355..3474630 (-) 276 WP_339246003.1 late competence protein ComFB -
  NYE53_RS17830 (NYE53_17830) comFA 3474690..3476081 (-) 1392 WP_339246005.1 ATP-dependent helicase ComFA Machinery gene
  NYE53_RS17835 (NYE53_17835) - 3476187..3477032 (-) 846 WP_003227986.1 DegV family protein -
  NYE53_RS17840 (NYE53_17840) degU 3477130..3477819 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE53_RS17845 (NYE53_17845) degS 3477902..3479059 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NYE53_RS17850 (NYE53_17850) - 3479276..3479929 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52549.60 Da        Isoelectric Point: 9.7191

>NTDB_id=967829 NYE53_RS17830 WP_339246005.1 3474690..3476081(-) (comFA) [Bacillus sp. FSL R5-0523]
MNVPVEKNISFSKELQQTLRSRHLLRTELPFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPCI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPSKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=967829 NYE53_RS17830 WP_339246005.1 3474690..3476081(-) (comFA) [Bacillus sp. FSL R5-0523]
GTGAATGTGCCAGTTGAAAAAAACATTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTACCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGCTATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTCCCTTGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTAATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TTCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGTCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

97.84

100

0.978

Multiple sequence alignment