Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NYE53_RS17820 Genome accession   NZ_CP150251
Coordinates   3473648..3474370 (-) Length   240 a.a.
NCBI ID   WP_339246000.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0523     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3468648..3479370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE53_RS17785 (NYE53_17785) fliW 3468788..3469219 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  NYE53_RS17790 (NYE53_17790) - 3469240..3469815 (-) 576 WP_015384781.1 DUF6470 family protein -
  NYE53_RS17795 (NYE53_17795) flgL 3469862..3470758 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  NYE53_RS17800 (NYE53_17800) flgK 3470769..3472292 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  NYE53_RS17805 (NYE53_17805) flgN 3472311..3472793 (-) 483 WP_251188233.1 flagellar protein FlgN -
  NYE53_RS17810 (NYE53_17810) flgM 3472809..3473075 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE53_RS17815 (NYE53_17815) - 3473156..3473575 (-) 420 WP_339245999.1 TIGR03826 family flagellar region protein -
  NYE53_RS17820 (NYE53_17820) comFC 3473648..3474370 (-) 723 WP_339246000.1 comF operon protein ComFC Machinery gene
  NYE53_RS17825 (NYE53_17825) comFB 3474355..3474630 (-) 276 WP_339246003.1 late competence protein ComFB -
  NYE53_RS17830 (NYE53_17830) comFA 3474690..3476081 (-) 1392 WP_339246005.1 ATP-dependent helicase ComFA Machinery gene
  NYE53_RS17835 (NYE53_17835) - 3476187..3477032 (-) 846 WP_003227986.1 DegV family protein -
  NYE53_RS17840 (NYE53_17840) degU 3477130..3477819 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE53_RS17845 (NYE53_17845) degS 3477902..3479059 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27549.84 Da        Isoelectric Point: 9.3154

>NTDB_id=967828 NYE53_RS17820 WP_339246000.1 3473648..3474370(-) (comFC) [Bacillus sp. FSL R5-0523]
MSNEVGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=967828 NYE53_RS17820 WP_339246000.1 3473648..3474370(-) (comFC) [Bacillus sp. FSL R5-0523]
ATGTCAAACGAAGTAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.75

100

0.988

Multiple sequence alignment