Detailed information    

insolico Bioinformatically predicted

Overview


Name   rapC   Type   Regulator
Locus tag   NYE53_RS02160 Genome accession   NZ_CP150251
Coordinates   425664..426812 (+) Length   382 a.a.
NCBI ID   WP_015252823.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0523     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context


Location: 420664..431812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE53_RS02140 (NYE53_02140) - 421038..421718 (-) 681 WP_339247002.1 ABC transporter ATP-binding protein -
  NYE53_RS02145 (NYE53_02145) - 421734..423197 (-) 1464 WP_339247005.1 ABC transporter permease -
  NYE53_RS02150 (NYE53_02150) yclJ 423411..424094 (+) 684 WP_015482792.1 two-component system response regulator YclJ -
  NYE53_RS02155 (NYE53_02155) yclK 424081..425502 (+) 1422 WP_339247008.1 two-component system sensor histidine kinase YclK -
  NYE53_RS02160 (NYE53_02160) rapC 425664..426812 (+) 1149 WP_015252823.1 response regulator aspartate phosphatase RapC Regulator
  NYE53_RS02165 (NYE53_02165) phrC 426796..426918 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  NYE53_RS02170 (NYE53_02170) - 427018..427107 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  NYE53_RS02175 (NYE53_02175) - 427188..427301 (-) 114 WP_003234495.1 YjcZ family sporulation protein -
  NYE53_RS02180 (NYE53_02180) - 427454..428818 (-) 1365 WP_339247010.1 aspartate kinase -
  NYE53_RS02185 (NYE53_02185) ceuB 429203..430153 (+) 951 WP_088325307.1 petrobactin ABC transporter permease YclN Machinery gene
  NYE53_RS02190 (NYE53_02190) yclO 430146..431093 (+) 948 WP_014475805.1 petrobactin ABC transporter permease YclO -

Sequence


Protein


Download         Length: 382 a.a.        Molecular weight: 45677.71 Da        Isoelectric Point: 5.0423

>NTDB_id=967770 NYE53_RS02160 WP_015252823.1 425664..426812(+) (rapC) [Bacillus sp. FSL R5-0523]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKRGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=967770 NYE53_RS02160 WP_015252823.1 425664..426812(+) (rapC) [Bacillus sp. FSL R5-0523]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
CCGCGGGATGTATGAGTTTGATAAGCGAGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTCTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCTTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAGTGCCATTT
CGTGTTCGGGGTTAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAACATGGCCC
AAGCAGAACAAAAAGCCCAGCTGGTTGGAAGAGCATACTACAATCTCGGGTTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACATTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACGGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAGTACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.476

100

0.995

  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568


Multiple sequence alignment