Detailed information NTG0096738

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: AACH49_RS06020
• Genome accession: NZ_AP028991
• Coordinates: 1213438..1214040 (+)
• Length: 200 a.a.
• NCBI ID: WP_000271551.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain TUM19381
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1208438..1219040

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AACH49_RS05980	-	1208587..1208706 (+)	120	WP_000840602.1	hypothetical protein	-
AACH49_RS05985 (TUM19381_11000)	mreC	1208906..1209748 (+)	843	WP_000911038.1	rod shape-determining protein MreC	-
AACH49_RS05990 (TUM19381_11010)	mreD	1209748..1210278 (+)	531	WP_001259930.1	rod shape-determining protein MreD	-
AACH49_RS05995 (TUM19381_11020)	rplU	1210514..1210822 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
AACH49_RS06000 (TUM19381_11030)	-	1210828..1211148 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
AACH49_RS06005 (TUM19381_11040)	rpmA	1211160..1211444 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
AACH49_RS06010 (TUM19381_11050)	obgE	1211664..1212956 (+)	1293	WP_000496100.1	GTPase ObgE	-
AACH49_RS06015 (TUM19381_11060)	-	1212969..1213424 (+)	456	WP_000368899.1	ACT domain-containing protein	-
AACH49_RS06020 (TUM19381_11070)	ruvA	1213438..1214040 (+)	603	WP_000271551.1	Holliday junction branch migration protein RuvA	Machinery gene
AACH49_RS06025 (TUM19381_11080)	ruvB	1214072..1215076 (+)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
AACH49_RS06030 (TUM19381_11090)	queA	1215078..1216103 (+)	1026	WP_001008435.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
AACH49_RS06035 (TUM19381_11100)	tgt	1216126..1217265 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
AACH49_RS06040 (TUM19381_11110)	yajC	1217284..1217544 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22253.45 Da
• Isoelectric Point: 5.7132

>NTDB_id=96738 AACH49_RS06020 WP_000271551.1 1213438..1214040(+) (ruvA) [Staphylococcus aureus strain TUM19381]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKQLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=96738 AACH49_RS06020 WP_000271551.1 1213438..1214040(+) (ruvA) [Staphylococcus aureus strain TUM19381]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCAACTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA N terminal domain (RuvA_N) (1-61)

• RuvA, C-terminal domain (RuvA_C) (156-197)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.734	99.5	0.465
ruvA	Streptococcus pneumoniae R6	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae D39	46.231	99.5	0.46
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.714	99.5	0.425