Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   ACKWPP_RS09970 Genome accession   NZ_CP176418
Coordinates   1965084..1966124 (-) Length   346 a.a.
NCBI ID   WP_024411653.1    Uniprot ID   -
Organism   Streptococcus suis strain KKAHC02     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1960084..1971124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWPP_RS09940 (ACKWPP_09940) - 1961054..1961362 (-) 309 WP_002942377.1 YlxQ-related RNA-binding protein -
  ACKWPP_RS09945 (ACKWPP_09945) rnpM 1961349..1961645 (-) 297 WP_024389460.1 RNase P modulator RnpM -
  ACKWPP_RS09950 (ACKWPP_09950) nusA 1961662..1962804 (-) 1143 WP_004194726.1 transcription termination factor NusA -
  ACKWPP_RS09955 (ACKWPP_09955) rimP 1962877..1963347 (-) 471 WP_079396220.1 ribosome maturation factor RimP -
  ACKWPP_RS09960 (ACKWPP_09960) trmB 1963605..1964243 (-) 639 WP_409373898.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACKWPP_RS09965 (ACKWPP_09965) ccrZ 1964240..1965034 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  ACKWPP_RS09970 (ACKWPP_09970) pptB 1965084..1966124 (-) 1041 WP_024411653.1 ABC transporter permease Regulator
  ACKWPP_RS09975 (ACKWPP_09975) pptA 1966121..1966855 (-) 735 WP_002942356.1 ABC transporter ATP-binding protein Regulator
  ACKWPP_RS09980 (ACKWPP_09980) - 1966918..1967331 (+) 414 WP_024385169.1 HIT family protein -
  ACKWPP_RS09985 (ACKWPP_09985) - 1967333..1967635 (+) 303 WP_024395377.1 hypothetical protein -
  ACKWPP_RS09990 (ACKWPP_09990) - 1967745..1968938 (-) 1194 WP_409373899.1 LCP family protein -
  ACKWPP_RS09995 (ACKWPP_09995) - 1968935..1969462 (-) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  ACKWPP_RS10000 (ACKWPP_10000) tsaE 1969455..1969895 (-) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 40181.54 Da        Isoelectric Point: 10.1278

>NTDB_id=966879 ACKWPP_RS09970 WP_024411653.1 1965084..1966124(-) (pptB) [Streptococcus suis strain KKAHC02]
MKELFQQRRIDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYRQLLLSFPENPLPIVFVVIAISLLVLVSGRIATYLEE
ADQIFLLTKEKDILQGLEVAARRTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVAGLLTLLVLKCLFVKRQLVAYQSQGV
LDWSKAIQDEQKRKQSILRFFALFTTVKGISTTVKPRSYLNGILRLVKSRQTWFYLYLRAFLRSGDYLGLTIRLLLLAIL
SLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQYITQLYPLEKDSKKIGLQNLLRVILYSLLVVELGFALLFSKENA
MVVVLLLVGIFLHEIYLPLKLKKLID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=966879 ACKWPP_RS09970 WP_024411653.1 1965084..1966124(-) (pptB) [Streptococcus suis strain KKAHC02]
ATGAAAGAATTGTTTCAACAACGCCGAATAGATTTTTTAAATCGTTGTTCCAAGTATCTGCGCTATGTTCTGAATGACCA
TTTTGTTTTGGTTCTCATGGTTTTGTTAGGATTTTTGAGTTTGCAATACCGTCAATTATTGTTGTCATTCCCTGAGAATC
CGTTGCCGATTGTTTTTGTGGTTATTGCAATCAGTCTACTGGTACTAGTGTCCGGAAGAATTGCGACTTATCTAGAAGAA
GCTGATCAAATCTTCCTATTGACCAAGGAAAAAGACATTCTGCAAGGACTCGAAGTTGCAGCCAGACGCACGGTCTTGTT
TTGGTCCTCTATACAGGTGGTGGTTCAGCTTGTTTTGTTACCAATCTATTTGAAACTGGGTTTACCGGTGTGGATGATTG
TAGCTGGTCTTCTTACTTTGTTGGTTTTAAAATGTCTTTTTGTCAAGCGCCAATTAGTGGCTTATCAGTCACAGGGAGTA
TTGGACTGGTCTAAGGCTATTCAAGATGAACAAAAAAGGAAACAGTCTATTTTACGTTTCTTTGCCTTATTTACGACGGT
TAAAGGGATCAGTACGACTGTTAAACCGAGAAGCTATCTCAATGGAATCTTGCGTCTCGTCAAGTCGAGACAGACTTGGT
TTTATCTCTACTTACGGGCTTTCTTGCGTTCAGGAGACTACTTGGGCTTGACGATACGTCTACTGTTGTTGGCGATTTTG
TCCCTATTTGCCATTGAAGAATCGTGGTTATCCATCGGCCTAGTTTTAGTCTTTCATTATTTGCTTGTCTTCCAGTTGTT
GGGGCTTTACAAGCATTATGATTATCAATATATAACACAACTGTATCCTCTGGAGAAAGATTCCAAGAAAATTGGTCTTC
AGAATTTGCTTAGAGTGATTTTATATAGTCTATTAGTAGTGGAATTGGGCTTTGCTCTGCTATTTTCTAAAGAGAATGCG
ATGGTAGTCGTCTTACTTCTCGTGGGGATTTTCTTGCATGAAATATATTTGCCTCTAAAATTAAAAAAATTGATTGACTA
A

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(153-329)

Bacterial ABC transporter protein EcsB (EcsB)

(2-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

45.739

100

0.465
  pptB Streptococcus thermophilus LMD-9

45.17

100

0.46

Multiple sequence alignment