Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MKY23_RS28475 Genome accession   NZ_CP150221
Coordinates   6521186..6521671 (-) Length   161 a.a.
NCBI ID   WP_090923588.1    Uniprot ID   A0A2W6NKB9
Organism   Paenibacillus sp. FSL R7-0272     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6516186..6526671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY23_RS28450 (MKY23_28450) opp4B 6516366..6517328 (-) 963 WP_154889655.1 oligopeptide ABC transporter permease -
  MKY23_RS28455 (MKY23_28455) - 6517336..6518268 (-) 933 WP_090923584.1 ATP-binding cassette domain-containing protein -
  MKY23_RS28460 (MKY23_28460) - 6518273..6519271 (-) 999 WP_090923585.1 ABC transporter ATP-binding protein -
  MKY23_RS28465 (MKY23_28465) - 6520007..6520633 (-) 627 WP_339834294.1 M15 family metallopeptidase -
  MKY23_RS28470 (MKY23_28470) rpsR 6520860..6521129 (-) 270 WP_090923587.1 30S ribosomal protein S18 -
  MKY23_RS28475 (MKY23_28475) ssbA 6521186..6521671 (-) 486 WP_090923588.1 single-stranded DNA-binding protein Machinery gene
  MKY23_RS28480 (MKY23_28480) rpsF 6521723..6522016 (-) 294 WP_024629534.1 30S ribosomal protein S6 -
  MKY23_RS28485 (MKY23_28485) - 6522232..6522426 (+) 195 WP_090923589.1 YjzC family protein -
  MKY23_RS28495 (MKY23_28495) - 6523103..6523312 (-) 210 WP_090923590.1 DUF951 domain-containing protein -
  MKY23_RS28500 (MKY23_28500) - 6523302..6524243 (-) 942 WP_154960431.1 mechanosensitive ion channel family protein -
  MKY23_RS28505 (MKY23_28505) - 6524262..6524525 (-) 264 WP_186809681.1 DUF3343 domain-containing protein -
  MKY23_RS28510 (MKY23_28510) yyaC 6524643..6525248 (+) 606 WP_090923592.1 spore protease YyaC -
  MKY23_RS28515 (MKY23_28515) - 6525223..6525723 (-) 501 WP_090923593.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17675.54 Da        Isoelectric Point: 4.8453

>NTDB_id=966806 MKY23_RS28475 WP_090923588.1 6521186..6521671(-) (ssbA) [Paenibacillus sp. FSL R7-0272]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESANREGGGGGGQPMREEPSYGGGGGRASNNNAARSNNQDPFSDDGKPIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=966806 MKY23_RS28475 WP_090923588.1 6521186..6521671(-) (ssbA) [Paenibacillus sp. FSL R7-0272]
TTGTTGAACCGTGTCATTCTGATCGGCCGGTTAACCCGGGATCCTGAGTTACGTTACACTCCAGCAGGAGTAGCCGTGAC
ACAATTTACTTTGGCCGTAGACAGACCGTTTACAAGCCAAGGAGGAGAGCGGGAAGCAGATTTTATTCCGGTCGTAACCT
GGAGACAGCTTGCCGAGACTTGTGCAAACTATTTGCGTAAAGGTCGTCTGGCTGCAGTCGAAGGACGCATTCAAGTACGG
AACTACGAGAATAACGAAGGAAAACGTGTATACGTGACCGAAGTCATTGCCGATAATGTTCGTTTCTTGGAGTCAGCTAA
CCGCGAAGGCGGTGGCGGCGGGGGTCAACCTATGCGTGAAGAGCCTTCTTATGGAGGCGGCGGCGGACGTGCAAGCAACA
ATAATGCTGCGCGTAGCAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATTGATATATCGGATGATGATTTGCCA
TTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2W6NKB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.302

100

0.634
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.528
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.357

69.565

0.385

Multiple sequence alignment