Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   MKX55_RS10935 Genome accession   NZ_CP150214
Coordinates   2199533..2200231 (+) Length   232 a.a.
NCBI ID   WP_339238130.1    Uniprot ID   -
Organism   Oceanobacillus sp. FSL W7-1281     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2194533..2205231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX55_RS10900 (MKX55_10900) - 2194570..2195268 (+) 699 WP_339238116.1 DJ-1/PfpI family protein -
  MKX55_RS10905 (MKX55_10905) - 2195342..2196379 (+) 1038 WP_339238118.1 serine hydrolase domain-containing protein -
  MKX55_RS10910 (MKX55_10910) - 2196511..2196762 (-) 252 WP_339238120.1 hypothetical protein -
  MKX55_RS10915 (MKX55_10915) - 2196862..2197137 (-) 276 WP_339238122.1 hypothetical protein -
  MKX55_RS10920 (MKX55_10920) - 2197146..2197898 (-) 753 WP_339238124.1 ABC transporter permease -
  MKX55_RS10925 (MKX55_10925) - 2197895..2198620 (-) 726 WP_339238126.1 ABC transporter permease -
  MKX55_RS10930 (MKX55_10930) - 2198617..2199372 (-) 756 WP_339238128.1 ABC transporter ATP-binding protein -
  MKX55_RS10935 (MKX55_10935) scnR 2199533..2200231 (+) 699 WP_339238130.1 response regulator transcription factor Regulator
  MKX55_RS10940 (MKX55_10940) - 2200233..2201639 (+) 1407 WP_339238131.1 HAMP domain-containing sensor histidine kinase -
  MKX55_RS10945 (MKX55_10945) erm 2201899..2202636 (+) 738 WP_339238133.1 23S ribosomal RNA methyltransferase Erm -
  MKX55_RS10950 (MKX55_10950) - 2202725..2203747 (-) 1023 WP_339238135.1 HAMP domain-containing sensor histidine kinase -
  MKX55_RS10955 (MKX55_10955) - 2203744..2204433 (-) 690 WP_339238137.1 response regulator transcription factor -
  MKX55_RS10960 (MKX55_10960) - 2204443..2205156 (-) 714 WP_339238139.1 hypothetical protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26402.57 Da        Isoelectric Point: 5.0942

>NTDB_id=966537 MKX55_RS10935 WP_339238130.1 2199533..2200231(+) (scnR) [Oceanobacillus sp. FSL W7-1281]
MDYIKQKRILLVDDEAALLEMVTSILKNSGFQQIRTAKTMKEAITAANAYKPEFAILDVMLPDGDGFTLLKQLREIADYP
VLFLTARGEDEDKFAGFDSGADDYLVKPFLPKELIFRVTAILRRSYKGENPRVLLQHCEIDFERAVVVKEGEERLLTAKE
FELLSELYRQAGRIVTIDALCEAAWGENPFGYENSLMAHIRRIREKIEANPSKPVSLLTVKGLGYKLIVEER

Nucleotide


Download         Length: 699 bp        

>NTDB_id=966537 MKX55_RS10935 WP_339238130.1 2199533..2200231(+) (scnR) [Oceanobacillus sp. FSL W7-1281]
ATGGATTATATCAAACAAAAACGAATTTTACTGGTGGATGATGAAGCGGCATTATTGGAAATGGTGACTTCTATTTTAAA
GAACAGTGGTTTTCAACAAATACGTACGGCGAAGACAATGAAAGAAGCAATTACAGCAGCGAATGCGTATAAACCGGAAT
TCGCAATCCTCGATGTCATGCTGCCGGATGGAGATGGGTTTACTTTATTAAAACAATTAAGAGAGATCGCTGATTATCCT
GTGCTTTTCCTGACAGCCCGAGGAGAGGATGAGGATAAATTTGCCGGATTTGATTCAGGAGCAGATGATTATCTGGTAAA
ACCTTTTTTACCCAAGGAGTTGATTTTTCGGGTCACAGCTATTCTCCGGCGAAGCTACAAAGGGGAGAATCCCAGAGTTC
TTTTGCAGCATTGTGAAATTGACTTTGAACGAGCAGTTGTTGTGAAAGAAGGAGAGGAACGCCTGCTAACTGCTAAAGAA
TTTGAACTGCTGTCAGAATTGTATCGTCAGGCTGGACGTATTGTAACAATCGATGCATTATGTGAAGCGGCCTGGGGAGA
AAATCCTTTCGGCTACGAAAACTCTTTGATGGCACATATTCGGCGGATTCGTGAAAAAATAGAAGCAAACCCGTCTAAGC
CGGTATCGCTTTTAACGGTGAAAGGATTAGGATATAAATTGATCGTGGAGGAACGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

49.345

98.707

0.487
  micA Streptococcus pneumoniae Cp1015

37.826

99.138

0.375
  vicR Streptococcus mutans UA159

36.797

99.569

0.366

Multiple sequence alignment