Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   MKY65_RS11330 Genome accession   NZ_CP150212
Coordinates   2308079..2308777 (+) Length   232 a.a.
NCBI ID   WP_339184872.1    Uniprot ID   -
Organism   Oceanobacillus sp. FSL W7-1293     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2303079..2313777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY65_RS11300 (MKY65_11300) - 2303454..2303705 (-) 252 WP_339184863.1 hypothetical protein -
  MKY65_RS11305 (MKY65_11305) - 2303801..2304079 (-) 279 WP_339184865.1 hypothetical protein -
  MKY65_RS11310 (MKY65_11310) - 2304088..2304840 (-) 753 WP_339184867.1 ABC transporter permease -
  MKY65_RS11315 (MKY65_11315) - 2304837..2305562 (-) 726 WP_339184868.1 ABC transporter permease -
  MKY65_RS11320 (MKY65_11320) - 2305559..2306314 (-) 756 WP_339184870.1 ABC transporter ATP-binding protein -
  MKY65_RS11325 (MKY65_11325) - 2306631..2307815 (+) 1185 WP_339185204.1 IS110 family transposase -
  MKY65_RS11330 (MKY65_11330) scnR 2308079..2308777 (+) 699 WP_339184872.1 response regulator transcription factor Regulator
  MKY65_RS11335 (MKY65_11335) - 2308779..2310185 (+) 1407 WP_339184874.1 HAMP domain-containing sensor histidine kinase -
  MKY65_RS11340 (MKY65_11340) erm 2310445..2311182 (+) 738 WP_339184876.1 23S ribosomal RNA methyltransferase Erm -
  MKY65_RS11345 (MKY65_11345) tnpA 2311853..2312284 (+) 432 WP_339184878.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26397.59 Da        Isoelectric Point: 5.2604

>NTDB_id=966497 MKY65_RS11330 WP_339184872.1 2308079..2308777(+) (scnR) [Oceanobacillus sp. FSL W7-1293]
MDYIKQKRILLVDDEAALLEMVTSILKNNGFQQIRTAKTMKEAITVANAYKPEFAILDVMLPDGDGFTLLKQLREIADYP
VLFLTARGEDEDKFAGFDSGADDYLVKPFLPKELIFRVTAILRRSYKGENPRVLLQHCEIEFERAVVVKEGEERPLTAKE
FELLSALYRQAGRIVTIDALCEAAWGENPFGYENSLMAHIRRIREKIEANPSKPVSLLTVKGLGYKLIVEER

Nucleotide


Download         Length: 699 bp        

>NTDB_id=966497 MKY65_RS11330 WP_339184872.1 2308079..2308777(+) (scnR) [Oceanobacillus sp. FSL W7-1293]
ATGGATTATATCAAACAAAAACGAATTTTACTGGTGGATGATGAAGCGGCATTATTGGAAATGGTGACTTCTATTTTAAA
GAACAATGGTTTTCAACAAATACGTACGGCGAAGACAATGAAAGAAGCAATTACAGTAGCGAATGCGTATAAACCGGAAT
TCGCAATCCTCGATGTCATGTTGCCGGATGGAGATGGGTTTACTTTATTAAAACAATTAAGAGAGATCGCTGATTATCCT
GTGCTTTTCCTGACAGCCCGAGGAGAGGATGAGGATAAATTTGCCGGATTTGATTCAGGAGCAGATGATTATCTGGTAAA
ACCTTTTTTACCCAAGGAGTTGATTTTTCGGGTCACAGCCATTCTCCGGCGAAGCTACAAAGGGGAGAATCCCAGAGTTC
TTTTGCAGCATTGTGAAATTGAGTTTGAACGAGCAGTTGTTGTGAAAGAAGGAGAGGAACGCCCGCTAACTGCTAAAGAA
TTTGAACTGCTGTCAGCATTGTATCGTCAGGCAGGACGTATTGTAACAATCGACGCATTATGTGAAGCGGCCTGGGGAGA
AAATCCTTTCGGCTACGAAAACTCTTTGATGGCACATATTCGGCGGATTCGTGAAAAAATAGAAGCAAACCCGTCTAAGC
CGGTATCGCTTTTAACGGTGAAAGGATTGGGATATAAATTGATCGTGGAGGAACGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

49.345

98.707

0.487
  micA Streptococcus pneumoniae Cp1015

37.826

99.138

0.375
  vicR Streptococcus mutans UA159

36.797

99.569

0.366

Multiple sequence alignment