Detailed information NTG0966497

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: ACKN8R_RS07230
• Genome accession: NZ_CP176031
• Coordinates: 1536447..1537736 (+)
• Length: 429 a.a.
• NCBI ID: WP_021447448.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain L2171
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1531447..1542736

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKN8R_RS07215 (ACKN8R_07215)	lrp	1531946..1532440 (+)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-
ACKN8R_RS07220 (ACKN8R_07220)	-	1532593..1535679 (+)	3087	WP_031851609.1	DNA translocase FtsK	-
ACKN8R_RS07225 (ACKN8R_07225)	lolA	1535754..1536380 (+)	627	WP_023585423.1	outer membrane lipoprotein chaperone LolA	-
ACKN8R_RS07230 (ACKN8R_07230)	rarA	1536447..1537736 (+)	1290	WP_021447448.1	replication-associated recombination protein A	Machinery gene
ACKN8R_RS07235 (ACKN8R_07235)	serS	1537828..1539135 (+)	1308	WP_005495761.1	serine--tRNA ligase	-
ACKN8R_RS07240 (ACKN8R_07240)	-	1539505..1540071 (+)	567	WP_226056634.1	ATPase	-
ACKN8R_RS07245 (ACKN8R_07245)	-	1540065..1540505 (+)	441	WP_031777588.1	hypothetical protein	-
ACKN8R_RS07250 (ACKN8R_07250)	-	1540640..1540906 (+)	267	WP_015296513.1	DksA/TraR family C4-type zinc finger protein	-
ACKN8R_RS07255 (ACKN8R_07255)	bioA	1540976..1542256 (-)	1281	WP_020903988.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47564.76 Da
• Isoelectric Point: 5.8532

>NTDB_id=966497 ACKN8R_RS07230 WP_021447448.1 1536447..1537736(+) (rarA) [Vibrio parahaemolyticus strain L2171]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGDTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=966497 ACKN8R_RS07230 WP_021447448.1 1536447..1537736(+) (rarA) [Vibrio parahaemolyticus strain L2171]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCAGAAGTCGCTGCTAATT
ATGCCAATGCGGAAGTTGAACGCGTGTCTGCGGTGACGTCTGGTGTCAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTCCATCGCTTCAACAAATCGCAACAAGATGCGTT
CTTACCACATATTGAAGATGGAACCGTCACGTTTATTGGCGCAACGACAGAGAACCCGTCTTTCGAACTGAATAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGCCTGGGCGATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
CGATGCTCGCATGTCGCTTAACTACCTTGAACTTCTCTACGATATGGCAGAGGACAATGCGCAGGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGTCGATTACTTGCGATAGCATCGGAAGATGTCGGTAATGCGGACCCTAGAGCCATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGCGTTGGTCCAGCAGAGGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• AAA C-terminal domain (AAA_assoc_2) (170-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385