Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACKN8R_RS02610 Genome accession   NZ_CP176031
Coordinates   545395..547476 (-) Length   693 a.a.
NCBI ID   WP_140363036.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain L2171     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 540395..552476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKN8R_RS02590 (ACKN8R_02590) - 540978..541370 (+) 393 WP_005459029.1 DUF1090 domain-containing protein -
  ACKN8R_RS02595 (ACKN8R_02595) ompR 541589..542308 (+) 720 WP_005459027.1 two-component system response regulator OmpR -
  ACKN8R_RS02600 (ACKN8R_02600) envZ 542414..543706 (+) 1293 WP_005459014.1 two-component system sensor histidine kinase EnvZ -
  ACKN8R_RS02605 (ACKN8R_02605) - 543771..545162 (-) 1392 WP_180821768.1 uracil-xanthine permease family protein -
  ACKN8R_RS02610 (ACKN8R_02610) recG 545395..547476 (-) 2082 WP_140363036.1 ATP-dependent DNA helicase RecG Machinery gene
  ACKN8R_RS02615 (ACKN8R_02615) trmH 547595..548278 (-) 684 WP_005478720.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  ACKN8R_RS02620 (ACKN8R_02620) spoT 548336..550456 (-) 2121 WP_005459012.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  ACKN8R_RS02625 (ACKN8R_02625) rpoZ 550496..550768 (-) 273 WP_005379346.1 DNA-directed RNA polymerase subunit omega -
  ACKN8R_RS02630 (ACKN8R_02630) gmk 550950..551573 (-) 624 WP_005496750.1 guanylate kinase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76743.82 Da        Isoelectric Point: 7.9857

>NTDB_id=966472 ACKN8R_RS02610 WP_140363036.1 545395..547476(-) (recG) [Vibrio parahaemolyticus strain L2171]
MSAQMLSAVPLTSLSGVGAKVAEKLAKVGLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGKVMTVDTIFGKRKM
LTVKISDGNGTITLRFFNFTAAMKNNFSQGKLVHAYGEIKRGGMGLEIVHPDYKFYASEHKPDVEQSLTPVYPTTDGLRQ
ITLRNLTEQALVLLDKAAVQELLPSGLYNHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAVR
SKGQQDIALPLAPCDKLKKQLLAQLPFSPTNAQARVVKEIESDLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKGKAKETELARIASGEAQMIVGTHALFQEHVEFHHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNACL
NEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQEFKDNKLHLLVATTVIEVGVDVP
NSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRIARHIHDNYPSNAAAIIERWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=966472 ACKN8R_RS02610 WP_140363036.1 545395..547476(-) (recG) [Vibrio parahaemolyticus strain L2171]
ATGTCTGCCCAAATGCTATCTGCTGTTCCTTTAACTTCTCTATCAGGAGTTGGCGCCAAAGTCGCAGAAAAACTCGCTAA
AGTCGGCTTGCATAGCGTTCAAGATTTGTTGTTCCACCTGCCTCTACGCTACGAAGATCGCACCCGCATTTATCCTATTG
CCAAACTGCACGCAGGCCTTTGGGCCGCGGTACAAGGTAAAGTCATGACCGTCGATACCATTTTTGGTAAACGCAAAATG
CTGACAGTCAAAATCAGTGACGGCAATGGCACCATCACGCTGCGTTTTTTCAACTTTACTGCAGCGATGAAGAACAATTT
TTCACAGGGTAAGTTAGTACACGCTTACGGAGAAATTAAGCGTGGTGGTATGGGGCTGGAAATTGTGCACCCTGACTACA
AATTTTACGCCAGTGAACACAAGCCAGATGTGGAACAAAGCTTAACCCCGGTTTATCCAACCACAGATGGCCTGCGTCAA
ATCACTTTACGTAACCTTACTGAGCAAGCATTGGTGCTACTCGATAAAGCGGCAGTGCAAGAATTGCTACCTTCTGGCTT
GTATAACCATCAGATTACTATGTCGCAGGCGTTGCACACCATTCATCGCCCGCCGCCAACCATTAATTTAGATGAATTTG
ATGAAGGTAAGCACCCCGCTCAAATCCGTTTGATCATGGAAGAATTGCTCGCCCAAAACTTGTCGATGTTGGCGGTTCGC
AGCAAAGGCCAGCAAGATATCGCCTTACCGCTCGCACCATGTGACAAACTGAAAAAGCAGCTGTTGGCGCAACTGCCGTT
TTCTCCGACCAATGCTCAAGCACGCGTGGTGAAAGAGATTGAATCCGACCTCGAAAAGCCACACCCAATGATGCGTCTTG
TCCAAGGTGACGTAGGCTCAGGAAAAACCCTCGTCGCGGCACTGGCTGCGGTTCGAGCTATCGAGCACGGTTATCAGGTC
GCACTAATGGCACCAACTGAGCTGCTCGCCGAACAACACGCCATCAATTTCGCCAACTGGTTTGAAGCCATGGGCATTCA
AGTGGGCTGGCTTGCTGGTAAGCTCAAGGGCAAAGCCAAAGAGACGGAACTGGCTCGCATTGCCAGCGGTGAAGCGCAAA
TGATAGTGGGTACTCACGCCCTCTTCCAAGAACATGTGGAATTTCATCACCTAGCTTTAGTCATCATTGATGAGCAGCAC
CGCTTCGGCGTCCATCAGCGATTAGAGTTACGTGAGAAAGGGGCAAAACAAGGCGCGTATCCGCATCAGCTCATCATGAC
GGCGACTCCGATTCCTCGCACGCTAGCAATGACAGCGTATGCTGATTTGGAAACGTCGGTGATAGACGAATTACCACCAG
GCCGAACGCCGATTCAAACCGTCGCCATTCCAGATACCAAACGGGACGACATTGTCGAGCGGGTACGAAACGCTTGTCTT
AACGAAGGCAAGCAAGCGTATTGGGTGTGTACGCTGATCGATGAATCGGAAGTGTTGGAAGCTCAAGCCGCAGCAGACAC
CGCCGAAGAGTTGCAGCGCAAACTGCCAGATGTAAAGATTGGCCTAGTTCATGGCCGTATGAAGCCCGCCGAAAAGCAAG
CTGTCATGCAAGAGTTTAAAGACAACAAGCTCCACCTGCTCGTAGCCACGACGGTGATAGAAGTTGGCGTAGACGTGCCA
AACTCTAGCTTGATGATCATAGAAAACCCTGAACGCCTTGGTTTGGCTCAATTACACCAGTTAAGAGGCCGCGTCGGTCG
AGGCTCGGTTGCCAGTCACTGTGTCCTGCTGTACCACGCCCCCCTGTCGAAAACCGCACAAAAACGACTCGGTGTGCTGC
GTGAAAGTAACGATGGCTTTGTTATTGCGCAGAAAGACCTCGAGATCCGCGGGCCCGGCGAATTGTTGGGCACCAAACAA
ACAGGCTTGGCTGATTTCAAAATTGCCGATTTAGTTCGAGATCAACGCTTAATCCCAGAAGTTCAGCGTATTGCACGTCA
TATTCACGACAATTACCCAAGCAATGCAGCCGCCATCATCGAACGCTGGCTAGGCGAGCGTGATATCTACTCCAAAGCGT
AA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

RecG wedge domain (RecG_wedge)

(15-171)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

DEAD/DEAH box helicase (DEAD)

(271-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.256

96.97

0.478
  recG/mmsA Streptococcus pneumoniae R6

40.299

96.681

0.39
  recG/mmsA Streptococcus pneumoniae R36A

40.299

96.681

0.39
  recG Bacillus subtilis subsp. subtilis str. 168

39.726

94.805

0.377