Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   MKY48_RS18885 Genome accession   NZ_CP150206
Coordinates   4239353..4240066 (-) Length   237 a.a.
NCBI ID   WP_215162392.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL W8-0187     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4234353..4245066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY48_RS18870 (MKY48_18870) - 4235297..4236670 (-) 1374 WP_339265424.1 extracellular solute-binding protein -
  MKY48_RS18875 (MKY48_18875) - 4236916..4237788 (+) 873 WP_339290341.1 AraC family transcriptional regulator -
  MKY48_RS18880 (MKY48_18880) - 4237965..4239353 (-) 1389 WP_339290343.1 HAMP domain-containing sensor histidine kinase -
  MKY48_RS18885 (MKY48_18885) scnR 4239353..4240066 (-) 714 WP_215162392.1 response regulator transcription factor Regulator
  MKY48_RS18890 (MKY48_18890) - 4240219..4241142 (+) 924 WP_339290344.1 ABC transporter ATP-binding protein -
  MKY48_RS18895 (MKY48_18895) - 4241142..4241891 (+) 750 WP_339290345.1 ABC transporter permease -
  MKY48_RS18900 (MKY48_18900) - 4241903..4242634 (+) 732 WP_339290347.1 ABC transporter permease -
  MKY48_RS18905 (MKY48_18905) - 4243044..4243988 (-) 945 WP_339290349.1 copper amine oxidase N-terminal domain-containing protein -
  MKY48_RS18910 (MKY48_18910) - 4244138..4244959 (-) 822 WP_339290350.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27147.53 Da        Isoelectric Point: 5.2306

>NTDB_id=966340 MKY48_RS18885 WP_215162392.1 4239353..4240066(-) (scnR) [Paenibacillus sp. FSL W8-0187]
MDLIKNKKILIVDDEPEIREMIERFLRREGFFRIYTAGNFSNALSVCRSEKPDAAILDIMLPDGDGFSLLSSIRSFTDMP
VLFLSARGEDEDRLLGLGLGADDYMVKPFLPRELILRLMAILKRVYASNIVERLPVFRLGALTVDLDSAVVLREHKEFSL
TAKEHSILMKLYENQGRIVTSDALCQAVWGDEIYGYENTLMVHVRRIREKIEEDPSNPVYLLTVRGLGYKLMTQESR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=966340 MKY48_RS18885 WP_215162392.1 4239353..4240066(-) (scnR) [Paenibacillus sp. FSL W8-0187]
ATGGACTTGATAAAGAATAAAAAAATACTGATTGTTGACGACGAGCCTGAAATACGGGAAATGATTGAACGTTTCCTACG
AAGAGAAGGCTTCTTCCGGATCTATACTGCCGGCAATTTCTCGAATGCCCTGTCTGTATGCAGATCGGAGAAGCCAGATG
CGGCCATATTGGATATCATGCTGCCGGATGGAGACGGCTTTTCGCTGCTTTCATCCATCCGGTCGTTTACGGACATGCCT
GTACTGTTTTTGTCTGCGCGAGGTGAAGATGAAGATCGGCTGCTCGGGCTAGGCTTGGGCGCTGATGATTATATGGTCAA
GCCCTTTTTGCCCAGAGAGCTTATTCTCCGACTGATGGCTATTTTGAAGCGGGTATATGCCTCCAACATCGTAGAACGGT
TACCTGTATTTCGGTTGGGTGCTCTAACGGTAGATTTGGATAGCGCTGTCGTACTAAGGGAGCACAAAGAATTCTCGTTG
ACTGCCAAGGAGCACTCCATACTGATGAAGCTGTATGAGAATCAGGGCCGGATCGTAACCAGTGACGCTTTATGCCAAGC
CGTATGGGGTGATGAGATTTATGGTTATGAGAACACTTTGATGGTGCATGTTCGACGCATTCGGGAGAAAATCGAGGAAG
ATCCATCAAATCCGGTGTATTTGTTAACCGTGCGTGGACTCGGGTATAAACTCATGACACAGGAGTCCCGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.661

95.781

0.485
  vicR Streptococcus mutans UA159

39.914

98.312

0.392
  micA Streptococcus pneumoniae Cp1015

40.789

96.203

0.392

Multiple sequence alignment