Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACKQF3_RS01010 Genome accession   NZ_CP175806
Coordinates   214600..216678 (-) Length   692 a.a.
NCBI ID   WP_000080586.1    Uniprot ID   -
Organism   Vibrio cholerae strain N19-2759     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 209600..221678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKQF3_RS00995 (ACKQF3_00995) ompR 210717..211439 (+) 723 WP_000230023.1 two-component system response regulator OmpR -
  ACKQF3_RS01000 (ACKQF3_01000) envZ 211508..212824 (+) 1317 WP_248333069.1 two-component system sensor histidine kinase EnvZ -
  ACKQF3_RS01005 (ACKQF3_01005) - 212849..214255 (-) 1407 WP_317006890.1 uracil-xanthine permease family protein -
  ACKQF3_RS01010 (ACKQF3_01010) recG 214600..216678 (-) 2079 WP_000080586.1 ATP-dependent DNA helicase RecG Machinery gene
  ACKQF3_RS01015 (ACKQF3_01015) spoT 216796..218913 (-) 2118 WP_000280452.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  ACKQF3_RS01020 (ACKQF3_01020) rpoZ 218945..219217 (-) 273 WP_000135052.1 DNA-directed RNA polymerase subunit omega -
  ACKQF3_RS01025 (ACKQF3_01025) gmk 219325..219948 (-) 624 WP_000515789.1 guanylate kinase -
  ACKQF3_RS01030 (ACKQF3_01030) - 220316..220987 (+) 672 WP_001015358.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 76962.23 Da        Isoelectric Point: 7.9764

>NTDB_id=966280 ACKQF3_RS01010 WP_000080586.1 214600..216678(-) (recG) [Vibrio cholerae strain N19-2759]
MSQLLSAVPLCELSGVGAKVAEKLEKVGLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAAVQGKVMAVDTLFGKRKML
TVKISDGNGTLTLRFFNFTAAMKNNFAEGKFVHAYGEIKRGNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQL
TLRNLTDQALALLEKSAVQELLPSGLYDQQMTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAIRS
QGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVA
LMAPTELLAEQHSLNFAQWLKPMGIQVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHR
FGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHACLN
EGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPN
ASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFHVPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQT
GLADFKIADLVRDQQLVPQVQRIARHIHERYPQNAQAIIDRWLGERDIYAKA

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=966280 ACKQF3_RS01010 WP_000080586.1 214600..216678(-) (recG) [Vibrio cholerae strain N19-2759]
ATGTCACAACTCCTTTCAGCCGTTCCTCTTTGTGAACTCTCCGGTGTCGGGGCCAAAGTCGCCGAAAAACTGGAGAAAGT
CGGTTTGCACACCGTGCAGGATCTGCTGTTTCATCTTCCGCTGCGTTATGAAGATCGCACTCGCGTTTATCCGATAGTGC
AACTGCACCACGGTTTATGGGCTGCGGTGCAAGGTAAAGTGATGGCGGTGGATACCCTGTTTGGCAAACGCAAAATGCTC
ACCGTAAAAATCAGTGATGGCAACGGTACACTGACGCTGCGTTTTTTTAACTTCACCGCGGCGATGAAAAACAACTTTGC
GGAAGGCAAATTTGTGCATGCCTATGGGGAAATCAAACGCGGTAATCAAGGCTTAGAGATCATCCATCCTGACTACAAAT
TCTTTGCCCCTGCACAAACGCCCGATGTCGAACCGAACCTGACTCCGGTTTACCCTACCACTGAAGGGCTGCGCCAACTG
ACCCTGCGTAATTTGACCGACCAAGCGTTGGCGCTACTGGAAAAATCCGCGGTGCAGGAGTTACTGCCATCCGGGCTTTA
CGATCAGCAGATGACCTTGGCCCAAGCGCTGAAAATCATTCATCGCCCATCGGCAGATATCGATTTACGTCTGTTTGAAC
AAGGGCGACATCCGGCGCAAGTTCGGCTGATCATGGAAGAACTGCTGGCACAGAATCTCTCGATGCTGGCGATTCGCAGC
CAAGGCCAGCAAGATGTGGCCTTGCCACTGGCCCCCGTCCACCAACTCAAACAACAACTCTTGGCACAACTGCCCTTTTC
ACCGACTAAGGCGCAGCAGCGCGTGGTCGCCGAAATTGAAGCGGATTTAGAAAAACCACATCCAATGATGCGCTTAGTGC
AAGGCGATGTGGGCTCAGGCAAAACCTTAGTCGCAGCACTTGCGGCAGTGCGGGCTATTGAGCATGGTTATCAAGTGGCC
TTGATGGCTCCTACCGAGCTGTTGGCCGAGCAGCACTCGCTCAATTTTGCGCAGTGGCTGAAACCAATGGGCATTCAAGT
AGGATGGCTCGCGGGGAAACTCAAAGGCAAAGCGCGGGAAACGGAGCTGGCACGCATCGCCAGTGGCGAAGTGAAAATGG
TGGTCGGCACCCATGCACTGTTTCAAGAGCAAGTGTCGTTTGACCATCTTGCCTTGGTGATTATTGATGAGCAGCATCGC
TTCGGGGTGCATCAGCGCTTAGAGCTACGCGAGAAAGGCGCAAAACAAGGCGCGTATCCGCATCAGCTCATCATGACTGC
TACTCCGATCCCGCGTACTTTGGCGATGACGGCTTATGCCGATTTGGAAACCTCAGTGATTGATGAGTTACCCCCCGGGC
GTACTCCGATTCAAACCGTAGCGATTCCGGATACCAAACGCGATGAGATTGTCGAGCGCATTCGCCACGCCTGCCTCAAC
GAAGGCAAGCAAGCATATTGGGTGTGTACTTTGATTGATGAATCCGAAGTGCTGGAAGCGCAAGCGGCCGCAGAAACGGC
CGAGGAACTGCAACGTAAACTGCCCGAAGTCAAAATCGGCTTAGTGCATGGCCGGATGAAACCCGCCGAAAAACAAGCGG
TAATGCAAGCGTTTAAAAACAATGAGCTGCATCTGCTCGTCGCCACTACAGTGATTGAAGTGGGCGTGGATGTGCCCAAT
GCCAGCTTGATGATCATTGAAAACCCCGAACGTTTGGGGCTGGCTCAACTACACCAGCTACGCGGCCGTGTTGGGCGTGG
TACCGTAGCCAGCCATTGTGTTCTGCTGTTTCATGTACCACTCTCCAAAACCGCGCAAAAGCGTTTAGGCGTTTTGCGTG
AAAGCAACGATGGATTTGTCATCGCGCAGCGCGACTTGGAAATTCGTGGCCCCGGAGAGCTACTGGGTACCAAACAAACC
GGCTTGGCCGATTTCAAAATTGCCGATCTGGTACGCGATCAGCAACTGGTTCCGCAAGTGCAACGCATCGCGCGACATAT
CCATGAACGCTACCCACAAAATGCACAAGCCATCATCGACCGCTGGTTAGGCGAACGTGATATTTACGCCAAAGCTTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(271-432)

RecG wedge domain (RecG_wedge)

(15-171)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-674)

Helicase conserved C-terminal domain (Helicase_C)

(479-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.595

97.11

0.491
  recG/mmsA Streptococcus pneumoniae R6

39.701

96.821

0.384
  recG/mmsA Streptococcus pneumoniae R36A

39.701

96.821

0.384
  recG Bacillus subtilis subsp. subtilis str. 168

39.171

94.075

0.369