Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   NYE32_RS04585 Genome accession   NZ_CP150201
Coordinates   937224..938036 (+) Length   270 a.a.
NCBI ID   WP_339157105.1    Uniprot ID   -
Organism   Streptococcus sp. FSL R7-0248     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 932224..943036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE32_RS04560 (NYE32_04560) - 932566..933264 (-) 699 WP_002886251.1 amino acid ABC transporter permease -
  NYE32_RS04565 (NYE32_04565) - 933282..934115 (-) 834 WP_037611665.1 transporter substrate-binding domain-containing protein -
  NYE32_RS04570 (NYE32_04570) - 934125..934892 (-) 768 WP_038675884.1 amino acid ABC transporter ATP-binding protein -
  NYE32_RS04575 (NYE32_04575) vicR 935178..935885 (+) 708 WP_002884978.1 response regulator YycF Regulator
  NYE32_RS04580 (NYE32_04580) vicK 935878..937218 (+) 1341 WP_013990681.1 cell wall metabolism sensor histidine kinase VicK Regulator
  NYE32_RS04585 (NYE32_04585) vicX 937224..938036 (+) 813 WP_339157105.1 MBL fold metallo-hydrolase Regulator
  NYE32_RS04590 (NYE32_04590) - 938096..938455 (+) 360 WP_037597735.1 YbaN family protein -
  NYE32_RS04595 (NYE32_04595) - 938507..939721 (-) 1215 WP_339157106.1 aminoacyltransferase -
  NYE32_RS04600 (NYE32_04600) yidA 939723..940532 (-) 810 WP_339157107.1 sugar-phosphatase -
  NYE32_RS04605 (NYE32_04605) - 940711..941568 (+) 858 WP_339157108.1 GNAT family N-acetyltransferase -
  NYE32_RS04610 (NYE32_04610) - 941661..942047 (+) 387 WP_073686299.1 DUF1934 domain-containing protein -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30137.02 Da        Isoelectric Point: 5.3536

>NTDB_id=966168 NYE32_RS04585 WP_339157105.1 937224..938036(+) (vicX) [Streptococcus sp. FSL R7-0248]
MTSDLGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMESKNMLGKIDNSQKHVFSRDKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GIIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAHMTME
NQLARADFGVGTDFKVYDTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=966168 NYE32_RS04585 WP_339157105.1 937224..938036(+) (vicX) [Streptococcus sp. FSL R7-0248]
ATGACCTCAGATTTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACTGGTAATTCCTTTTACTTGGAAACTCCAGA
GAAGAAGATTCTTGTAGATGCTGGTTTGTCTGGTAAGAAAATCACAAGTTTGCTAGCTGAGATTGATCGTGATCCGAGTG
ATTTGGATGCAATCTTAGTAACGCATGAACACAAGGATCACATCCATGGTGTAGGCGTTTTAGCTCGTAAATATGGCATG
GATATATACGCCAACGAGAAAACCTGGCAAATTATGGAAAGTAAAAATATGCTTGGCAAGATTGATAATAGCCAGAAACA
TGTTTTTTCTCGTGACAAGCTTCTGACCTTTGGAGACATTGATATTGAGTCTTTTGGAGTTAGTCACGATGCTATTGATC
CACAGTTCTATCGCTTTATGAAAGATGGAAAAAGTTTTGTCATGCTGACGGATACGGGTTATGTTTCTGATCGTATGGCA
GGTATTATTGAGAATGCTGATGGCTATCTGATTGAGTCCAATCATGATATTGAAATCCTCAGAGCAGGTTCATATCCTTG
GTCAACTAAGCAACGTATCCTCTCTGATCAAGGTCACTTGTGTAATGAAGATGGAGCGGATGCTATGATTCGTACCATAG
GTAACAAAACTAAAAAGATCTACTTGGGTCACCTTTCTAAAGAAAATAATATCAAGGAGTTGGCCCACATGACGATGGAA
AATCAGCTGGCACGTGCTGACTTTGGTGTTGGAACTGACTTCAAGGTTTATGATACCTCACCAGACACAGCGACACCACT
GACAGATATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.239

99.259

0.767

Multiple sequence alignment