Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NSQ79_RS09000 Genome accession   NZ_CP150200
Coordinates   1943735..1944253 (-) Length   172 a.a.
NCBI ID   WP_002891844.1    Uniprot ID   A0AB33ZBY1
Organism   Streptococcus sp. FSL W7-1342     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1938735..1949253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ79_RS08980 (NSQ79_08980) - 1940654..1941598 (+) 945 WP_045769126.1 magnesium transporter CorA family protein -
  NSQ79_RS08985 (NSQ79_08985) - 1941668..1942339 (+) 672 WP_013991182.1 DUF1129 domain-containing protein -
  NSQ79_RS08990 (NSQ79_08990) - 1942450..1943331 (+) 882 WP_004183473.1 DUF4300 family protein -
  NSQ79_RS08995 (NSQ79_08995) rpsR 1943454..1943693 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  NSQ79_RS09000 (NSQ79_09000) ssb 1943735..1944253 (-) 519 WP_002891844.1 single-stranded DNA-binding protein Machinery gene
  NSQ79_RS09005 (NSQ79_09005) rpsF 1944265..1944555 (-) 291 WP_002884188.1 30S ribosomal protein S6 -
  NSQ79_RS09010 (NSQ79_09010) - 1944756..1945709 (+) 954 WP_045769125.1 hypothetical protein -
  NSQ79_RS09015 (NSQ79_09015) mutY 1946872..1948023 (+) 1152 WP_014632598.1 A/G-specific adenine glycosylase -
  NSQ79_RS09020 (NSQ79_09020) - 1948372..1948581 (-) 210 WP_014632597.1 hypothetical protein -
  NSQ79_RS09025 (NSQ79_09025) - 1948602..1949003 (-) 402 WP_004183523.1 DUF6608 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18594.32 Da        Isoelectric Point: 4.9163

>NTDB_id=966122 NSQ79_RS09000 WP_002891844.1 1943735..1944253(-) (ssb) [Streptococcus sp. FSL W7-1342]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=966122 NSQ79_RS09000 WP_002891844.1 1943735..1944253(-) (ssb) [Streptococcus sp. FSL W7-1342]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAACGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAACCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGAGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36

Multiple sequence alignment